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      Cortinarius pakistanicus and C. pseudotorvus : two new species in oak forests in the Pakistan Himalayas

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          Abstract

          The genus of basidiomycetous fungi Cortinarius occurs worldwide, from subtropical to boreal latitudes. Although molecular systematics has triggered the study of these fungi in the Americas and Europe in the last two decades, there is still limited research on its diversity in large portions of the planet, such as the high mountain ranges of Asia. Several collections of Cortinarius were made during mycological field trips conducted between 2014 and 2018 in pure oak forests in the Pakistan Himalayas. An integrative framework combining morphological and phylogenetic data was employed for their study. As a result, the two species C. pakistanicus and C. pseudotorvus are here described as new to science. Detailed macro- and micro-morphological descriptions, including SEM images of spores, and a molecular phylogenetic reconstruction based on nrITS sequence data are provided and used to discriminate the new species from morphologically and phylogenetically close taxa. Whereas our phylogenetic tree inference gave unequivocal support for the inclusion of C. pseudotorvus within C. sect. Telamonia , the assignment of C. pakistanicus to any known sections remained elusive. These species likely establish ectomycorrhizal associations with trees in the genus Quercus , making this type of forest in the Pakistan Himalayas a promising focus for future research on the diversity of Cortinarius .

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          Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

          S Altschul (1997)
          The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased substantially while enhancing their sensitivity to weak similarities. A new criterion for triggering the extension of word hits, combined with a new heuristic for generating gapped alignments, yields a gapped BLAST program that runs at approximately three times the speed of the original. In addition, a method is introduced for automatically combining statistically significant alignments produced by BLAST into a position-specific score matrix, and searching the database using this matrix. The resulting Position-Specific Iterated BLAST (PSI-BLAST) program runs at approximately the same speed per iteration as gapped BLAST, but in many cases is much more sensitive to weak but biologically relevant sequence similarities. PSI-BLAST is used to uncover several new and interesting members of the BRCT superfamily.
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            An arctic community of symbiotic fungi assembled by long-distance dispersers: phylogenetic diversity of ectomycorrhizal basidiomycetes in Svalbard based on soil and sporocarp DNA

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              Functional outcomes of fungal community shifts driven by tree genotype and spatial-temporal factors in Mediterranean pine forests.

              Fungi provide relevant ecosystem services contributing to primary productivity and the cycling of nutrients in forests. These fungal inputs can be decisive for the resilience of Mediterranean forests under global change scenarios, making necessary an in-deep knowledge about how fungal communities operate in these ecosystems. By using high-throughput sequencing and enzymatic approaches, we studied the fungal communities associated with three genotypic variants of Pinus pinaster trees, in 45-year-old common garden plantations. We aimed to determine the impact of biotic (i.e., tree genotype) and abiotic (i.e., season, site) factors on the fungal community structure, and to explore whether structural shifts triggered functional responses affecting relevant ecosystem processes. Tree genotype and spatial-temporal factors were pivotal structuring fungal communities, mainly by influencing their assemblage and selecting certain fungi. Diversity variations of total fungal community and of that of specific fungal guilds, together with edaphic properties and tree's productivity, explained relevant ecosystem services such as processes involved in carbon turnover and phosphorous mobilization. A mechanistic model integrating relations of these variables and ecosystem functional outcomes is provided. Our results highlight the importance of structural shifts in fungal communities because they may have functional consequences for key ecosystem processes in Mediterranean forests.
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                Author and article information

                Contributors
                Journal
                MycoKeys
                MycoKeys
                11
                urn:lsid:arphahub.com:pub:C004A564-9D6A-5F9F-B058-6A3815DFE9C3
                MycoKeys
                Pensoft Publishers
                1314-4057
                1314-4049
                2020
                30 October 2020
                : 74
                : 91-108
                Affiliations
                [1 ] Department of Botany, University of the Punjab, Lahore, Pakistan University of the Punjab Lahore Pakistan
                [2 ] Department of Biogeochemistry and Microbial Ecology, National Museum of Natural Sciences (CSIC), Madrid E-28006, Spain National Museum of Natural Sciences Madrid Spain
                [3 ] University of Swat, Swat, Pakistan University of Swat Swat Pakistan
                [4 ] Tossalet de les Forques 44, Berga E-08600, Spain Unaffiliated Berga Spain
                [5 ] Doctor Climent 26, Quatretonda E-46837, Spain Unaffiliated Quatretonda Spain
                Author notes
                Corresponding author: Arooj Naseer ( arooj.hons@ 123456pu.edu.pk )

                Academic editor: Zai-Wei Ge

                Author information
                https://orcid.org/0000-0002-4458-9043
                https://orcid.org/0000-0001-6929-1182
                Article
                49734
                10.3897/mycokeys.74.49734
                7648052
                5e5b214d-f1bf-4ff8-9b2c-55265d9b8469
                Arooj Naseer, Isaac Garrido-Benavent, Junaid Khan, Josep Ballarà, Rafael Mahiques, Abdul Nasir Khalid, Hassan Sher

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 30 December 2019
                : 25 April 2020
                Categories
                Research Article
                Basidiomycota
                Biodiversity & Conservation
                Biogeography
                Molecular systematics
                Asia

                biodiversity,ectomycorrhizal fungi,its,phylogeny,systematics,taxonomy

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