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      The genetic structure of populations of Isthmiophora melis (Schrank, 1788) (Digenea: Echinostomatidae). Does the host’s diet matter?

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          Abstract

          Background

          Here we provide a comparative analysis of the genetic structure of populations (based on nad1 mtDNA) of Isthmiophora melis isolated from the American mink ( Neogale vison), an introduced invasive species, commonly occurring in the territory of Poland, and from the striped field mouse ( Apodemus agrarius).

          Methods

          A total of 133 specimens of I. melis were obtained from naturally infected N. vison collected from six localities in Poland (108 samples) and 25 individuals of I. melis from A. agrarius. All sequences of the nad1 gene obtained during the present study were assembled and aligned. The standard statistics for haplotype composition, i.e., the number of haplotypes, haplotype diversity, nucleotide diversity, and average number of nucleotide differences, were calculated. Haplotype analysis and visualization of haplotype frequency among populations were performed using a median-joining network.

          Results

          Based on the samples collected from different localities in Poland, our study revealed that the overall genetic diversity of I. melis isolated from the American mink and of the striped field mouse do not differ significantly. The median-joining network showed that the three main haplotypes are in the centre of a star-like structure, with the remaining haplotypes as the satellites, reflecting the recent expansion of the populations.

          Conclusions

          The overall genetic diversity of I. melis isolated from the American mink and striped field mouse reveals a high level of homogeneity. Moreover, regional differences in the food composition of the definitive hosts play an important role in shaping the genetic structure of the trematode populations.

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          Most cited references32

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          Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.

          We present here a new version of the Arlequin program available under three different forms: a Windows graphical version (Winarl35), a console version of Arlequin (arlecore), and a specific console version to compute summary statistics (arlsumstat). The command-line versions run under both Linux and Windows. The main innovations of the new version include enhanced outputs in XML format, the possibility to embed graphics displaying computation results directly into output files, and the implementation of a new method to detect loci under selection from genome scans. Command-line versions are designed to handle large series of files, and arlsumstat can be used to generate summary statistics from simulated data sets within an Approximate Bayesian Computation framework. © 2010 Blackwell Publishing Ltd.
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            Median-joining networks for inferring intraspecific phylogenies.

            Reconstructing phylogenies from intraspecific data (such as human mitochondrial DNA variation) is often a challenging task because of large sample sizes and small genetic distances between individuals. The resulting multitude of plausible trees is best expressed by a network which displays alternative potential evolutionary paths in the form of cycles. We present a method ("median joining" [MJ]) for constructing networks from recombination-free population data that combines features of Kruskal's algorithm for finding minimum spanning trees by favoring short connections, and Farris's maximum-parsimony (MP) heuristic algorithm, which sequentially adds new vertices called "median vectors", except that our MJ method does not resolve ties. The MJ method is hence closely related to the earlier approach of Foulds, Hendy, and Penny for estimating MP trees but can be adjusted to the level of homoplasy by setting a parameter epsilon. Unlike our earlier reduced median (RM) network method, MJ is applicable to multistate characters (e.g., amino acid sequences). An additional feature is the speed of the implemented algorithm: a sample of 800 worldwide mtDNA hypervariable segment I sequences requires less than 3 h on a Pentium 120 PC. The MJ method is demonstrated on a Tibetan mitochondrial DNA RFLP data set.
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              DnaSP, DNA polymorphism analyses by the coalescent and other methods

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                Author and article information

                Contributors
                grzegorz.zalesny@upwr.edu.pl
                Journal
                Parasit Vectors
                Parasit Vectors
                Parasites & Vectors
                BioMed Central (London )
                1756-3305
                7 June 2023
                7 June 2023
                2023
                : 16
                : 188
                Affiliations
                [1 ]GRID grid.411200.6, ISNI 0000 0001 0694 6014, Department of Invertebrate Systematics and Ecology, Institute of Environmental Biology, , Wrocław University of Environmental and Life Sciences, ; Kożuchowska 5B, 51-631 Wrocław, Poland
                [2 ]GRID grid.413454.3, ISNI 0000 0001 1958 0162, Ornithological Station, Museum and Institute of Zoology, , Polish Academy of Sciences, ; Nadwiślańska 108, 80-680 Gdańsk, Poland
                [3 ]GRID grid.8505.8, ISNI 0000 0001 1010 5103, Department of Parasitology, Faculty of Biological Sciences, , Wrocław University, ; Przybyszewskiego 63, 51-148 Wrocław, Poland
                [4 ]GRID grid.413454.3, ISNI 0000 0001 1958 0162, Mammal Research Institute, , Polish Academy of Sciences, ; Stoczek 1, Białowieża, Poland
                Article
                5811
                10.1186/s13071-023-05811-3
                10245597
                5d8f9762-c30f-4275-8c53-470d5ecfdbd3
                © The Author(s) 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 25 January 2023
                : 14 May 2023
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100004569, Ministerstwo Edukacji i Nauki;
                Award ID: 9003/IP1//2015/73
                Award Recipient :
                Categories
                Research
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                © BioMed Central Ltd., part of Springer Nature 2023

                Parasitology
                isthmiophora melis,digenea,host–parasite relationship,genetic population structure,rodents,american mink

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