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      Conformation of the von Willebrand factor/factor VIII complex in quasi-static flow

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          Abstract

          Von Willebrand factor (VWF) is a plasma glycoprotein that circulates noncovalently bound to blood coagulation factor VIII (fVIII). VWF is a population of multimers composed of a variable number of ∼280 kDa monomers that is activated in shear flow to bind collagen and platelet glycoprotein Ibα. Electron microscopy, atomic force microscopy, small-angle neutron scattering, and theoretical studies have produced a model in which the conformation of VWF under static conditions is a compact, globular “ball-of-yarn,” implying strong, attractive forces between monomers. We performed sedimentation velocity (SV) analytical ultracentrifugation measurements on unfractionated VWF/fVIII complexes. There was a 20% per mg/ml decrease in the weight-average sedimentation coefficient, s w , in contrast to the ∼1% per mg/ml decrease observed for compact globular proteins. SV and dynamic light scattering measurements were performed on VWF/fVIII complexes fractionated by size-exclusion chromatography to obtain s w values and z-average diffusion coefficients, D z . Molecular weights estimated using these values in the Svedberg equation ranged from 1.7 to 4.1 MDa. Frictional ratios calculated from D z and molecular weights ranged from 2.9 to 3.4, in contrast to values of 1.1–1.3 observed for globular proteins. The Mark–Houwink–Kuhn–Sakurada scaling relationships between s w , D z and molecular weight, s = k M a s and D = k M a D , yielded estimates of 0.51 and –0.49 for a s and a D , respectively, consistent with a random coil, in contrast to the a s value of 0.65 observed for globular proteins. These results indicate that interactions between monomers are weak or nonexistent and that activation of VWF is intramonomeric.

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          Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.

          P. Schuck (2000)
          A new method for the size-distribution analysis of polymers by sedimentation velocity analytical ultracentrifugation is described. It exploits the ability of Lamm equation modeling to discriminate between the spreading of the sedimentation boundary arising from sample heterogeneity and from diffusion. Finite element solutions of the Lamm equation for a large number of discrete noninteracting species are combined with maximum entropy regularization to represent a continuous size-distribution. As in the program CONTIN, the parameter governing the regularization constraint is adjusted by variance analysis to a predefined confidence level. Estimates of the partial specific volume and the frictional ratio of the macromolecules are used to calculate the diffusion coefficients, resulting in relatively high-resolution sedimentation coefficient distributions c(s) or molar mass distributions c(M). It can be applied to interference optical data that exhibit systematic noise components, and it does not require solution or solvent plateaus to be established. More details on the size-distribution can be obtained than from van Holde-Weischet analysis. The sensitivity to the values of the regularization parameter and to the shape parameters is explored with the help of simulated sedimentation data of discrete and continuous model size distributions, and by applications to experimental data of continuous and discrete protein mixtures.
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            Analysis of Macromolecular Polydispersity in Intensity Correlation Spectroscopy: The Method of Cumulants

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              Dynamic light scattering: a practical guide and applications in biomedical sciences.

              Dynamic light scattering (DLS), also known as photon correlation spectroscopy (PCS), is a very powerful tool for studying the diffusion behaviour of macromolecules in solution. The diffusion coefficient, and hence the hydrodynamic radii calculated from it, depends on the size and shape of macromolecules. In this review, we provide evidence of the usefulness of DLS to study the homogeneity of proteins, nucleic acids, and complexes of protein-protein or protein-nucleic acid preparations, as well as to study protein-small molecule interactions. Further, we provide examples of DLS's application both as a complementary method to analytical ultracentrifugation studies and as a screening tool to validate solution scattering models using determined hydrodynamic radii.
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                Author and article information

                Contributors
                Journal
                J Biol Chem
                J Biol Chem
                The Journal of Biological Chemistry
                American Society for Biochemistry and Molecular Biology
                0021-9258
                1083-351X
                16 February 2021
                2021
                16 February 2021
                : 296
                : 100420
                Affiliations
                [1]Aflac Cancer and Blood Disorders Center, Children's Healthcare of Atlanta; Department of Pediatrics, Emory University, Atlanta, Georgia, USA
                Author notes
                []For correspondence: Pete Lollar jlollar@ 123456emory.edu
                Article
                S0021-9258(21)00193-9 100420
                10.1016/j.jbc.2021.100420
                8005835
                33600794
                5a770e9b-5839-47b7-a238-a04e50723cac
                © 2021 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 31 December 2020
                : 1 February 2021
                Categories
                Research Article

                Biochemistry
                von willebrand factor,factor viii,structural model,protein conformation,analytical ultracentrifugation,dynamic light scattering,size-exclusion chromatography,dls, dynamic light scattering,em, electron microscopy,mhks, mark–houwink–kuhn–sakurada,pdi, polydispersity index,sec, size-exclusion chromatography,sv, sedimentation velocity,sv auc, sedimentation velocity analytical ultracentrifugation,vwf, von willebrand factor

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