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      Influence of Colostrum and Vitamins A, D 3, and E on Early Intestinal Colonization of Neonatal Holstein Calves Infected with Mycobacterium avium subsp. paratuberculosis

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          Abstract

          Exposure of neonates to Mycobacterium avium subsp. paratuberculosis (MAP) via infected dams is the primary mode of transmission of Johne’s disease. Little is known about the impacts of feeding colostrum and supplemental vitamins on the gut microbiome in calves exposed to MAP. In the present study, calves were assigned at birth to one of six treatment groups: (1) Colostrum deprived (CD), no vitamins; (2) colostrum replacer (CR), no vitamins; (3) CR, vitamin A; (4) CR, vitamin D 3; (5) CR, vitamin E; (6) CR, vitamins A, D 3, E, with five calves per treatment in a 14-day study. All calves were orally inoculated with MAP on days 1 and 3 of the study. Differences due to vitamin supplementation were not significant but treatment groups CR-A, CR-E, and CR-ADE had higher numbers of MAP-positive tissues overall. Shannon diversity indices demonstrated regional differences in microbial communities, primarily Proteobacteria, Bacteroidetes, and Firmicutes, between the ileum, cecum, and spiral colon of all calves. CD calves exhibited increased richness compared with CR calves in the cecum and spiral colon and harbored increased Proteobacteria and decreased Bacteroidetes in the mucosa compared with the lumen for all three tissues. Overall, supplementation with vitamins did not appear to influence gut microbiome or impact MAP infection. Feeding of colostrum influenced gut microbiome and resulted in fewer incidences of dysbiosis.

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          Dendritic-cell control of pathogen-driven T-cell polarization.

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            Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations.

            Disturbance of the beneficial gut microbial community is a potential collateral effect of antibiotics, which have many uses in animal agriculture (disease treatment or prevention and feed efficiency improvement). Understanding antibiotic effects on bacterial communities at different intestinal locations is essential to realize the full benefits and consequences of in-feed antibiotics. In this study, we defined the lumenal and mucosal bacterial communities from the small intestine (ileum) and large intestine (cecum and colon) plus feces, and characterized the effects of in-feed antibiotics (chlortetracycline, sulfamethazine and penicillin (ASP250)) on these communities. 16S rRNA gene sequence and metagenomic analyses of bacterial membership and functions revealed dramatic differences between small and large intestinal locations, including enrichment of Firmicutes and phage-encoding genes in the ileum. The large intestinal microbiota encoded numerous genes to degrade plant cell wall components, and these genes were lacking in the ileum. The mucosa-associated ileal microbiota harbored greater bacterial diversity than the lumen but similar membership to the mucosa of the large intestine, suggesting that most gut microbes can associate with the mucosa and might serve as an inoculum for the lumen. The collateral effects on the microbiota of antibiotic-fed animals caused divergence from that of control animals, with notable changes being increases in Escherichia coli populations in the ileum, Lachnobacterium spp. in all gut locations, and resistance genes to antibiotics not administered. Characterizing the differential metabolic capacities and response to perturbation at distinct intestinal locations will inform strategies to improve gut health and food safety.
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              Host-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigm.

              Vertebrates engage in symbiotic associations with vast and complex microbial communities that colonize their gastrointestinal tracts. Recent advances have provided mechanistic insight into the important contributions of the gut microbiome to vertebrate biology, but questions remain about the evolutionary processes that have shaped symbiotic interactions in the gut and the consequences that arise for both the microbes and the host. Here we discuss the biological principles that underlie microbial symbiosis in the vertebrate gut and the potential of the development of mutualism. We then review phylogenetic and experimental studies on the vertebrate symbiont Lactobacillus reuteri that have provided novel insight into the ecological and evolutionary strategy of a gut microbe and its relationship with the host. We argue that a mechanistic understanding of the microbial symbiosis in the vertebrate gut and its evolution will be important to determine how this relationship can go awry, and it may reveal possibilities by which the gut microbiome can be manipulated to support health.
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                Author and article information

                Journal
                Vet Sci
                Vet Sci
                vetsci
                Veterinary Sciences
                MDPI
                2306-7381
                20 November 2019
                December 2019
                : 6
                : 4
                : 93
                Affiliations
                [1 ]US Department of Agriculture-Agricultural Research Service (USDA-ARS), National Animal Disease Center, Ames, IA 50010, USA; C.Jenvey@ 123456latrobe.edu.au (C.J.); Taylor.Wherry@ 123456usda.gov (T.W.)
                [2 ]Department of Animal Science, Iowa State University, Ames, IA 50011, USA; Lucas.Krueger@ 123456agriking.com (L.K.); dcbeitz@ 123456iastate.edu (D.B.)
                [3 ]Department of Veterinary Pathology, Iowa State University, Ames, IA 50011, USA; jesseh@ 123456iastate.edu
                Author notes
                [* ]Correspondence: judy.stabel@ 123456usda.gov ; Tel.: +1-515-337-7304
                [†]

                Current address: AgriBio Centre for AgriBioscience, Department of Animal, Plant and Soil Sciences, LaTrobe University, Bundoora 3086, Australia.

                [‡]

                Current address: College of Veterinary Medicine, Department of Pathology, University of Georgia, Athens, GA 30602, USA; jesse.hostetter@ 123456uga.edu .

                Author information
                https://orcid.org/0000-0001-9039-8582
                https://orcid.org/0000-0003-0380-0081
                https://orcid.org/0000-0002-4052-4330
                Article
                vetsci-06-00093
                10.3390/vetsci6040093
                6958420
                31756892
                598418df-4397-429a-b2c7-ce52e433a80b
                © 2019 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 30 September 2019
                : 15 November 2019
                Categories
                Article

                dairy calf,microbiome,colostrum,vitamins,mycobacterium avium subsp. paratuberculosis

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