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      LncSIK1 enhanced the sensitivity of AML cells to retinoic acid by the E2F1/autophagy pathway

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          Abstract

          Objectives

          This study aimed to investigate the biological impacts and possible mechanisms of a novel lncRNA, LncSIK1, in AML progression and retinoic acid‐regulated AML cell development.

          Materials and Methods

          The expression pattern of LncSIK1 was evaluated by qPCR and fluorescence in situ hybridization. CCK‐8 assay, immunofluorescence, Wright‐Giemsa staining, flow cytometry and Western blotting were performed to assess cell proliferation and differentiation. Bioluminescence imaging and H&E staining were used to detect AML progression in vivo. RNA or chromatin immunoprecipitation assays were conducted to measure the interaction of E2F1 and LncSIK1 or the LC3 and DRAM promoters. Autophagy was measured by transmission electron microscopy and Western blotting.

          Results

          LncSIK1 was silenced in bone marrow mononuclear cells from AML patients compared with those from healthy donors. LncSIK1 strengthened the effect of retinoic acid in inducing cell differentiation and inhibiting cell proliferation in AML cells. Moreover, the silencing of LncSIK1 was critical to maintaining AML leukaemogenesis, as LncSIK1 enhancement retarded AML progression in vivo. Mechanistically, in NB4 cells, LncSIK1 recruited the E2F1 protein to the promoters of LC3 and DRAM and induced autophagy‐dependent degradation of the oncoprotein PML‐RARa. However, LncSIK1 blocked E2F1 expression and the E2F1‐mediated transcription of LC3 and DRAM, thereby relieving aggressive autophagy in Molm13 cells.

          Conclusions

          Taken together, these data indicated that LncSIK1 was an important regulator of AML development through regulating the E2F1/autophagy signalling pathway.

          Abstract

          The hypothetical regulatory network of LncSIK1 in NB4 and Molm13 cells.

          1. LncSIK1 exerted its significant positive effect on the sensitivity of AML cells to retinoic acid.

          2. LncSIK1 enhancement retarded AML progression in vitro and in vivo.

          3. The E2F1/autophagy axis played an important role in LncSIK1‐regulated AML development.

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          Most cited references49

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          miRDB: an online database for prediction of functional microRNA targets

          Abstract MicroRNAs (miRNAs) are small noncoding RNAs that act as master regulators in many biological processes. miRNAs function mainly by downregulating the expression of their gene targets. Thus, accurate prediction of miRNA targets is critical for characterization of miRNA functions. To this end, we have developed an online database, miRDB, for miRNA target prediction and functional annotations. Recently, we have performed major updates for miRDB. Specifically, by employing an improved algorithm for miRNA target prediction, we now present updated transcriptome-wide target prediction data in miRDB, including 3.5 million predicted targets regulated by 7000 miRNAs in five species. Further, we have implemented the new prediction algorithm into a web server, allowing custom target prediction with user-provided sequences. Another new database feature is the prediction of cell-specific miRNA targets. miRDB now hosts the expression profiles of over 1000 cell lines and presents target prediction data that are tailored for specific cell models. At last, a new web query interface has been added to miRDB for prediction of miRNA functions by integrative analysis of target prediction and Gene Ontology data. All data in miRDB are freely accessible at http://mirdb.org.
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            Chloroquine inhibits autophagic flux by decreasing autophagosome-lysosome fusion.

            Macroautophagy/autophagy is a conserved transport pathway where targeted structures are sequestered by phagophores, which mature into autophagosomes, and then delivered into lysosomes for degradation. Autophagy is involved in the pathophysiology of numerous diseases and its modulation is beneficial for the outcome of numerous specific diseases. Several lysosomal inhibitors such as bafilomycin A1 (BafA1), protease inhibitors and chloroquine (CQ), have been used interchangeably to block autophagy in in vitro experiments assuming that they all primarily block lysosomal degradation. Among them, only CQ and its derivate hydroxychloroquine (HCQ) are FDA-approved drugs and are thus currently the principal compounds used in clinical trials aimed to treat tumors through autophagy inhibition. However, the precise mechanism of how CQ blocks autophagy remains to be firmly demonstrated. In this study, we focus on how CQ inhibits autophagy and directly compare its effects to those of BafA1. We show that CQ mainly inhibits autophagy by impairing autophagosome fusion with lysosomes rather than by affecting the acidity and/or degradative activity of this organelle. Furthermore, CQ induces an autophagy-independent severe disorganization of the Golgi and endo-lysosomal systems, which might contribute to the fusion impairment. Strikingly, HCQ-treated mice also show a Golgi disorganization in kidney and intestinal tissues. Altogether, our data reveal that CQ and HCQ are not bona fide surrogates for other types of late stage lysosomal inhibitors for in vivo experiments. Moreover, the multiple cellular alterations caused by CQ and HCQ call for caution when interpreting results obtained by blocking autophagy with this drug.
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              Autophagy pathway: Cellular and molecular mechanisms

              Macroautophagy/autophagy is an essential, conserved self-eating process that cells perform to allow degradation of intracellular components, including soluble proteins, aggregated proteins, organelles, macromolecular complexes, and foreign bodies. The process requires formation of a double-membrane structure containing the sequestered cytoplasmic material, the autophagosome, that ultimately fuses with the lysosome. This review will define this process and the cellular pathways required, from the formation of the double membrane to the fusion with lysosomes in molecular terms, and in particular highlight the recent progress in our understanding of this complex process.
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                Author and article information

                Contributors
                chenfeihu@ahmu.edu.cn
                Journal
                Cell Prolif
                Cell Prolif
                10.1111/(ISSN)1365-2184
                CPR
                Cell Proliferation
                John Wiley and Sons Inc. (Hoboken )
                0960-7722
                1365-2184
                29 January 2022
                March 2022
                : 55
                : 3 ( doiID: 10.1111/cpr.v55.3 )
                : e13185
                Affiliations
                [ 1 ] ringgold 12485; School of Pharmacy Anhui Medical University Hefei China
                [ 2 ] Inflammation and Immune Mediated Diseases Laboratory of Anhui Province Anhui Institute of Innovative Drugs Hefei China
                [ 3 ] ringgold 12485; Anhui Province Key Laboratory of Major Autoimmune Diseases Anhui Medical University Hefei China
                [ 4 ] Department of Anesthesiology the First Affiliated Hospital of Anhui Medical University Hefei China
                [ 5 ] Department of Obstetrics and Gynecology the First Affiliated Hospital of Anhui Medical University Hefei China
                Author notes
                [*] [* ] Correspondence

                Fei‐hu Chen, School of Pharmacy, Anhui Medical University, NO.81, Meishan Road; Hefei, Anhui 230032, China.

                Email: chenfeihu@ 123456ahmu.edu.cn

                Author information
                https://orcid.org/0000-0001-6778-8363
                Article
                CPR13185
                10.1111/cpr.13185
                8891555
                35092119
                58fc4206-3a5f-4dfd-afcc-5ad59ad28637
                © 2022 The Authors. Cell Proliferation Published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 28 December 2021
                : 04 November 2021
                : 30 December 2021
                Page count
                Figures: 8, Tables: 0, Pages: 15, Words: 7271
                Funding
                Funded by: Anhui Science and Technology Major Project
                Award ID: 17030801020
                Funded by: Anhui Natural Science Foundation‐Youth Project
                Award ID: 2008085QH399
                Funded by: Natural Science Research in Colleges and Universities in Anhui Province‐Key Projects
                Award ID: KJ2019A0272
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                March 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.1.2 mode:remove_FC converted:03.03.2022

                Cell biology
                acute myeloid leukaemia,autophagy,e2f1,lncsik1,retinoic acid
                Cell biology
                acute myeloid leukaemia, autophagy, e2f1, lncsik1, retinoic acid

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