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      Relationship between antibiotic resistance genes and metals in residential soil samples from Western Australia

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          Abstract

          Increasing drug-resistant infections have drawn research interest towards examining environmental bacteria and the discovery that many factors, including elevated metal conditions, contribute to proliferation of antibiotic resistance (AR). This study examined 90 garden soils from Western Australia to evaluate predictions of antibiotic resistance genes from total metal conditions by comparing the concentrations of 12 metals and 13 genes related to tetracycline, beta-lactam and sulphonamide resistance. Relationships existed between metals and genes, but trends varied. All metals, except Se and Co, were related to at least one AR gene in terms of absolute gene numbers, but only Al, Mn and Pb were associated with a higher percentage of soil bacteria exhibiting resistance, which is a possible indicator of population selection. Correlations improved when multiple factors were considered simultaneously in a multiple linear regression model, suggesting the possibility of additive effects occurring. Soil-metal concentrations must be considered when determining risks of AR in the environment and the proliferation of resistance.

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          Most cited references38

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          Tackling antibiotic resistance: the environmental framework.

          Antibiotic resistance is a threat to human and animal health worldwide, and key measures are required to reduce the risks posed by antibiotic resistance genes that occur in the environment. These measures include the identification of critical points of control, the development of reliable surveillance and risk assessment procedures, and the implementation of technological solutions that can prevent environmental contamination with antibiotic resistant bacteria and genes. In this Opinion article, we discuss the main knowledge gaps, the future research needs and the policy and management options that should be prioritized to tackle antibiotic resistance in the environment.
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            Antibiotics and antibiotic resistance genes in natural environments.

            The large majority of antibiotics currently used for treating infections and the antibiotic resistance genes acquired by human pathogens each have an environmental origin. Recent work indicates that the function of these elements in their environmental reservoirs may be very distinct from the "weapon-shield" role they play in clinical settings. Changes in natural ecosystems, including the release of large amounts of antimicrobials, might alter the population dynamics of microorganisms, including selection of resistance, with consequences for human health that are difficult to predict.
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              Antibiotic resistance genes as emerging contaminants: studies in northern Colorado.

              This study explores antibiotic resistance genes (ARGs) as emerging environmental contaminants. The purpose of this study was to investigate the occurrence of ARGs in various environmental compartments in northern Colorado, including Cache La Poudre (Poudre) River sediments, irrigation ditches, dairy lagoons, and the effluents of wastewater recycling and drinking water treatment plants. Additionally, ARG concentrations in the Poudre River sediments were analyzed at three time points at five sites with varying levels of urban/agricultural impact and compared with two previously published time points. It was expected that ARG concentrations would be significantly higher in environments directly impacted by urban/agricultural activity than in pristine and lesser-impacted environments. Polymerase chain reaction (PCR) detection assays were applied to detect the presence/absence of several tetracycline and sulfonamide ARGs. Quantitative real-time PCR was used to further quantify two tetracycline ARGs (tet(W) and tet(O)) and two sulfonamide ARGs (sul(I) and sul(II)). The following trend was observed with respect to ARG concentrations (normalized to eubacterial 16S rRNA genes): dairy lagoon water > irrigation ditch water > urban/agriculturally impacted river sediments (p < 0.0001), except for sul(II), which was absent in ditch water. It was noted that tet(W) and tet(O) were also present in treated drinking water and recycled wastewater, suggesting that these are potential pathways for the spread of ARGs to and from humans. On the basis of this study, there is a need for environmental scientists and engineers to help address the issue of the spread of ARGs in the environment.
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                Author and article information

                Contributors
                0141 548 3351 , charles.knapp@strath.ac.uk
                Journal
                Environ Sci Pollut Res Int
                Environ Sci Pollut Res Int
                Environmental Science and Pollution Research International
                Springer Berlin Heidelberg (Berlin/Heidelberg )
                0944-1344
                1614-7499
                7 November 2016
                7 November 2016
                2017
                : 24
                : 3
                : 2484-2494
                Affiliations
                [1 ]ISNI 0000000121138138, GRID grid.11984.35, Department of Civil & Environmental Engineering, , University of Strathclyde, ; Glasgow, Scotland G1 1XJ UK
                [2 ]ISNI 0000 0004 0389 4302, GRID grid.1038.a, School of Medical and Health Sciences, , Edith Cowan University, ; Joondalup, WA 6027 Australia
                [3 ]ISNI 0000 0004 0389 4302, GRID grid.1038.a, Centre for Ecosystem Management, , Edith Cowan University, ; Joondalup, WA 6027 Australia
                Author notes

                Responsible editor: Philippe Garrigues

                Article
                7997
                10.1007/s11356-016-7997-y
                5340841
                27822686
                58680751-8601-49c9-bd17-5020e10c4c5d
                © The Author(s) 2016

                Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

                History
                : 18 June 2016
                : 25 October 2016
                Funding
                Funded by: University of Strathclyde
                Categories
                Research Article
                Custom metadata
                © Springer-Verlag Berlin Heidelberg 2017

                General environmental science
                antimicrobial resistance,antibiotic resistance,garden soil,toxic heavy metal,qpcr

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