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      First molecular detection and characterization of herpesvirus and poxvirus in a Pacific walrus ( Odobenus rosmarus divergens)

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          Abstract

          Background

          Herpesvirus and poxvirus can infect a wide range of species: herpesvirus genetic material has been detected and amplified in five species of the superfamily Pinnipedia; poxvirus genetic material, in eight species of Pinnipedia. To date, however, genetic material of these viruses has not been detected in walrus ( Odobenus rosmarus), another marine mammal of the Pinnipedia clade, even though anti-herpesvirus antibodies have been detected in these animals.

          Case presentation

          In February 2013, a 9-year-old healthy captive female Pacific walrus died unexpectedly at L’Oceanografic (Valencia, Spain). Herpesvirus was detected in pharyngeal tonsil tissue by PCR. Phylogenetic analysis revealed that the virus belongs to the subfamily Gammaherpesvirinae. Poxvirus was also detected by PCR in skin, pre-scapular and tracheobronchial lymph nodes and tonsils. Gross lesions were not detected in any tissue, but histopathological analyses of pharyngeal tonsils and lymph nodes revealed remarkable lymphoid depletion and lymphocytolysis. Similar histopathological lesions have been previously described in bovine calves infected with an alphaherpesvirus, and in northern elephant seals infected with a gammaherpesvirus that is closely related to the herpesvirus found in this case. Intracytoplasmic eosinophilic inclusion bodies, consistent with poxviral infection, were also observed in the epithelium of the tonsilar mucosa.

          Conclusion

          To our knowledge, this is the first molecular identification of herpesvirus and poxvirus in a walrus. Neither virus was likely to have contributed directly to the death of our animal.

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          Most cited references47

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          A comprehensive comparison of multiple sequence alignment programs.

          In recent years improvements to existing programs and the introduction of new iterative algorithms have changed the state-of-the-art in protein sequence alignment. This paper presents the first systematic study of the most commonly used alignment programs using BAliBASE benchmark alignments as test cases. Even below the 'twilight zone' at 10-20% residue identity, the best programs were capable of correctly aligning on average 47% of the residues. We show that iterative algorithms often offer improved alignment accuracy though at the expense of computation time. A notable exception was the effect of introducing a single divergent sequence into a set of closely related sequences, causing the iteration to diverge away from the best alignment. Global alignment programs generally performed better than local methods, except in the presence of large N/C-terminal extensions and internal insertions. In these cases, a local algorithm was more successful in identifying the most conserved motifs. This study enables us to propose appropriate alignment strategies, depending on the nature of a particular set of sequences. The employment of more than one program based on different alignment techniques should significantly improve the quality of automatic protein sequence alignment methods. The results also indicate guidelines for improvement of alignment algorithms.
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            Multiple sequence alignment accuracy and phylogenetic inference.

            Phylogenies are often thought to be more dependent upon the specifics of the sequence alignment rather than on the method of reconstruction. Simulation of sequences containing insertion and deletion events was performed in order to determine the role that alignment accuracy plays during phylogenetic inference. Data sets were simulated for pectinate, balanced, and random tree shapes under different conditions (ultrametric equal branch length, ultrametric random branch length, nonultrametric random branch length). Comparisons between hypothesized alignments and true alignments enabled determination of two measures of alignment accuracy, that of the total data set and that of individual branches. In general, our results indicate that as alignment error increases, topological accuracy decreases. This trend was much more pronounced for data sets derived from more pectinate topologies. In contrast, for balanced, ultrametric, equal branch length tree shapes, alignment inaccuracy had little average effect on tree reconstruction. These conclusions are based on average trends of many analyses under different conditions, and any one specific analysis, independent of the alignment accuracy, may recover very accurate or inaccurate topologies. Maximum likelihood and Bayesian, in general, outperformed neighbor joining and maximum parsimony in terms of tree reconstruction accuracy. Results also indicated that as the length of the branch and of the neighboring branches increase, alignment accuracy decreases, and the length of the neighboring branches is the major factor in topological accuracy. Thus, multiple-sequence alignment can be an important factor in downstream effects on topological reconstruction.
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              Airborne micro-organisms: survival tests with four viruses.

              G Harper (1961)
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                Author and article information

                Contributors
                mar.melero@sanidadanimal.info
                dgarcia@oceanografic.org
                jmcorpa@uch.ceu.es
                jortega@uch.ceu.es
                consuelo@sanidadanimal.info
                jlcrespo@oceanografic.org
                belen@sanidadanimal.info
                jmvizcaino@visavet.ucm.es
                Journal
                BMC Vet Res
                BMC Vet. Res
                BMC Veterinary Research
                BioMed Central (London )
                1746-6148
                21 December 2014
                21 December 2014
                2014
                : 10
                : 1
                : 968
                Affiliations
                [ ]VISAVET Center, Veterinary School, Complutense University of Madrid, 28040 ᅟ, Madrid Spain
                [ ]Veterinary Services, Oceanografic, Parques Reunidos Valencia, Ciudad de las Artes y las Ciencias, 46013 ᅟ, Valencia Spain
                [ ]Biomedical Sciences Research Institute (PASAPTA-Pathology Group), Veterinary School, Universidad CEU Cardenal Herrera, Av. Seminario s/n, 46113 Moncada, Valencia Spain
                Article
                308
                10.1186/s12917-014-0308-2
                4299291
                25527906
                57f29ebf-6a37-4abf-a8cc-e95efe66fad4
                © Melero et al.; licensee BioMed Central. 2014

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 28 September 2014
                : 16 December 2014
                Categories
                Case Report
                Custom metadata
                © The Author(s) 2014

                Veterinary medicine
                herpesvirus,poxvirus,walrus,pinniped
                Veterinary medicine
                herpesvirus, poxvirus, walrus, pinniped

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