4
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Characterization of oscillations in the brain and cerebrospinal fluid using ultra-high field magnetic resonance imaging

      Preprint
      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Development of innovative non-invasive neuroimaging methods and biomarkers are critical for studying brain disease. In this work, we have developed a methodology to characterize the frequency responses and spatial localization of oscillations and movements of cerebrospinal fluid (CSF) flow in the human brain. Using 7 Tesla human MRI and ultrafast echo-planar imaging (EPI), in-vivo images were obtained to capture CSF oscillations and movements. Physiological data was simultaneously collected and correlated with the 7T MR data. The primary components of CSF oscillations were identified using spectral analysis (with frequency bands identified around 0.3Hz, 1.2Hz and 2.4Hz) and were mapped spatially and temporally onto the MR image domain and temporally onto the physiological domain. The developed methodology shows a good consistency and repeatability (standard deviation of 0.052 and 0.078 for 0.3Hz and 1.2Hz bands respectively) in-vivo for potential brain dynamics and CSF flow and clearance studies.

          Related collections

          Most cited references46

          • Record: found
          • Abstract: found
          • Article: not found

          FSL.

          FSL (the FMRIB Software Library) is a comprehensive library of analysis tools for functional, structural and diffusion MRI brain imaging data, written mainly by members of the Analysis Group, FMRIB, Oxford. For this NeuroImage special issue on "20 years of fMRI" we have been asked to write about the history, developments and current status of FSL. We also include some descriptions of parts of FSL that are not well covered in the existing literature. We hope that some of this content might be of interest to users of FSL, and also maybe to new research groups considering creating, releasing and supporting new software packages for brain image analysis. Copyright © 2011 Elsevier Inc. All rights reserved.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            N4ITK: improved N3 bias correction.

            A variant of the popular nonparametric nonuniform intensity normalization (N3) algorithm is proposed for bias field correction. Given the superb performance of N3 and its public availability, it has been the subject of several evaluation studies. These studies have demonstrated the importance of certain parameters associated with the B-spline least-squares fitting. We propose the substitution of a recently developed fast and robust B-spline approximation routine and a modified hierarchical optimization scheme for improved bias field correction over the original N3 algorithm. Similar to the N3 algorithm, we also make the source code, testing, and technical documentation of our contribution, which we denote as "N4ITK," available to the public through the Insight Toolkit of the National Institutes of Health. Performance assessment is demonstrated using simulated data from the publicly available Brainweb database, hyperpolarized (3)He lung image data, and 9.4T postmortem hippocampus data.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Functional connectivity in the motor cortex of resting human brain using echo-planar MRI.

              An MRI time course of 512 echo-planar images (EPI) in resting human brain obtained every 250 ms reveals fluctuations in signal intensity in each pixel that have a physiologic origin. Regions of the sensorimotor cortex that were activated secondary to hand movement were identified using functional MRI methodology (FMRI). Time courses of low frequency (< 0.1 Hz) fluctuations in resting brain were observed to have a high degree of temporal correlation (P < 10(-3)) within these regions and also with time courses in several other regions that can be associated with motor function. It is concluded that correlation of low frequency fluctuations, which may arise from fluctuations in blood oxygenation or flow, is a manifestation of functional connectivity of the brain.
                Bookmark

                Author and article information

                Contributors
                Role: ConceptualizationRole: MethodologyRole: SoftwareRole: Formal analysisRole: InvestigationRole: Writing - original draftRole: Writing - review and editing
                Role: ConceptualizationRole: MethodologyRole: SoftwareRole: Formal analysisRole: InvestigationRole: Writing - original draftRole: Writing - review and editing
                Role: ConceptualizationRole: MethodologyRole: Software
                Role: ConceptualizationRole: Writing - original draftRole: Writing - review and editing
                Role: ConceptualizationRole: Writing - original draftRole: Writing - review and editing
                Role: ConceptualizationRole: MethodologyRole: InvestigationRole: ResourcesRole: Writing - original draftRole: Writing - review and editing
                Role: ConceptualizationRole: Writing - original draftRole: Writing - review and editingRole: Funding acquisition
                Role: ConceptualizationRole: MethodologyRole: InvestigationRole: ResourcesRole: Writing - original draftRole: Writing - review and editingRole: SupervisionRole: Funding acquisition
                Journal
                medRxiv
                MEDRXIV
                medRxiv
                Cold Spring Harbor Laboratory
                06 December 2023
                : 2023.12.05.23299452
                Affiliations
                [1 ] Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA, United States
                [2 ] Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA, United States
                [3 ] Department of Radiology, University of Pittsburgh, Pittsburgh, PA, United States
                [4 ] Department of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, PA, United States
                Author notes
                [#]

                Equal contribution

                [* ] Corresponding author: tibrahim@ 123456pitt.edu
                Article
                10.1101/2023.12.05.23299452
                10723515
                38105931
                571a0071-1bce-4bb9-8a06-d889352a0f7a

                This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.

                History
                Funding
                Funded by: NIH
                Award ID: R01AG063525
                Award ID: R01MH111265
                Funded by: CAPES Foundation, Ministry of Education of Brazil
                Award ID: 88881.128222/2016-01
                Funded by: NSF
                Award ID: OAC-2117681
                Categories
                Article

                Comments

                Comment on this article