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      A dynamically coherent pattern of rhythms that matches between distant species across the evolutionary scale

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          Abstract

          We address the temporal organization of circadian and ultradian rhythms, crucial for understanding biological timekeeping in behavior, physiology, metabolism, and alignment with geophysical time. Using a newly developed five-steps wavelet-based approach to analyze high-resolution time series of metabolism in yeast cultures and spontaneous movement, metabolism, and feeding behavior in mice, rats, and quails, we describe a dynamically coherent pattern of rhythms spanning over a broad range of temporal scales (hours to minutes). The dynamic pattern found shares key features among the four, evolutionary distant, species analyzed. Specifically, a branching appearance given by splitting periods from 24 h into 12 h, 8 h and below in mammalian and avian species, or from 14 h down to 0.07 h in yeast. Scale-free fluctuations with long-range correlations prevail below ~ 4 h. Synthetic time series modeling support a scenario of coexisting behavioral rhythms, with circadian and ultradian rhythms at the center of the emergent pattern observed.

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          Most cited references77

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          Comparative genomics of the eukaryotes.

          A comparative analysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae-and the proteins they are predicted to encode-was undertaken in the context of cellular, developmental, and evolutionary processes. The nonredundant protein sets of flies and worms are similar in size and are only twice that of yeast, but different gene families are expanded in each genome, and the multidomain proteins and signaling pathways of the fly and worm are far more complex than those of yeast. The fly has orthologs to 177 of the 289 human disease genes examined and provides the foundation for rapid analysis of some of the basic processes involved in human disease.
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            Mosaic organization of DNA nucleotides

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              Restricted feeding uncouples circadian oscillators in peripheral tissues from the central pacemaker in the suprachiasmatic nucleus.

              In mammals, circadian oscillators exist not only in the suprachiasmatic nucleus, which harbors the central pacemaker, but also in most peripheral tissues. It is believed that the SCN clock entrains the phase of peripheral clocks via chemical cues, such as rhythmically secreted hormones. Here we show that temporal feeding restriction under light-dark or dark-dark conditions can change the phase of circadian gene expression in peripheral cell types by up to 12 h while leaving the phase of cyclic gene expression in the SCN unaffected. Hence, changes in metabolism can lead to an uncoupling of peripheral oscillators from the central pacemaker. Sudden large changes in feeding time, similar to abrupt changes in the photoperiod, reset the phase of rhythmic gene expression gradually and are thus likely to act through a clock-dependent mechanism. Food-induced phase resetting proceeds faster in liver than in kidney, heart, or pancreas, but after 1 wk of daytime feeding, the phases of circadian gene expression are similar in all examined peripheral tissues.
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                Author and article information

                Contributors
                miguel.aon@nih.gov
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                1 April 2023
                1 April 2023
                2023
                : 13
                : 5326
                Affiliations
                [1 ]GRID grid.10692.3c, ISNI 0000 0001 0115 2557, Instituto de Investigaciones Biológicas y Tecnológicas, , Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, ; Córdoba, Argentina
                [2 ]GRID grid.10692.3c, ISNI 0000 0001 0115 2557, Facultad de Ciencias Exactas, Físicas y Naturales, Instituto de Ciencia y Tecnología de los Alimentos (ICTA), , Universidad Nacional de Córdoba, ; Córdoba, Argentina
                [3 ]GRID grid.10692.3c, ISNI 0000 0001 0115 2557, Universidad Nacional de Córdoba, Facultad de Ciencias Exactas, Físicas y Naturales, , Departamento de Química, Cátedra de Química Biológica, ; Córdoba, Argentina
                [4 ]GRID grid.10692.3c, ISNI 0000 0001 0115 2557, Facultad de Matemática, Astronomía, Física y Computación, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Centro de Investigación y Estudios de La Matemática (CIEM, CONICET-UNC), , Universidad Nacional de Córdoba, ; Córdoba, Argentina
                [5 ]GRID grid.10692.3c, ISNI 0000 0001 0115 2557, Facultad de Matemática, Astronomía, Física y Computación, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Instituto de Física Enrique Gaviola (IFEG, CONICET-UNC), , Universidad Nacional de Córdoba, ; Córdoba, Argentina
                [6 ]GRID grid.5600.3, ISNI 0000 0001 0807 5670, Schools of Bioscience and Engineering, , Cardiff University, ; Cardiff, Wales, UK
                [7 ]GRID grid.419475.a, ISNI 0000 0000 9372 4913, Laboratory of Cardiovascular Science, National Institute on Aging, , NIH, ; Baltimore, MD USA
                [8 ]GRID grid.419475.a, ISNI 0000 0000 9372 4913, Translational Gerontology Branch, National Institute on Aging, , NIH, ; Baltimore, MD USA
                Article
                32286
                10.1038/s41598-023-32286-0
                10067965
                37005423
                56c1b926-3267-4005-893f-e4b5d69b686b
                © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 13 January 2023
                : 25 March 2023
                Funding
                Funded by: Fondo para la Investigación Científica y Tecnológica (FONCyT)
                Award ID: PICT-2016-0282
                Award ID: PICT-2018-01262
                Award Recipient :
                Funded by: Consejo Nacional para Investigaciones Científicas y Técnicas (CONICET), and Secretaría de Ciencia y Técnica (SeCyT), Universidad Nacional de Córdoba, Argentina
                Funded by: Intramural Research Program, NIA/NIH
                Funded by: National Institutes of Health (NIH)
                Categories
                Article
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                © The Author(s) 2023

                Uncategorized
                computational biology and bioinformatics,systems biology
                Uncategorized
                computational biology and bioinformatics, systems biology

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