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      THE ASD LIVING BIOLOGY: FROM CELL PROLIFERATION TO CLINICAL PHENOTYPE

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          Abstract

          Autism spectrum disorder (ASD) has captured the attention of scientists, clinicians and the lay public because of its uncertain origins and striking clinical symptoms. A spectrum of candidate etiologies including evidence of genetic variants, present a perplexing picture of ASD origins. Furthermore, reliance on postmortem and other neurobiological evidence from older ASD cases limits understanding of its origins and early developmental processes. Arguably the least studied and understood period in ASD is prenatal and early postnatal, when ASD biology begins in a child. Missing, therefore, is what we call the ASD Living Biology. This is a conceptual and paradigm shift towards a focus on the abnormal prenatal processes underlying ASD within each individual. The concept emphasizes the specific need for foundational knowledge of a child’s development from abnormal prenatal beginnings to early clinical stages; and the ASD Living Biology paradigm seeks this knowledge by linking genetic and in vitro prenatal molecular, cellular and neural measurements with early in vivo postnatal molecular, neural and clinical presentation and progression in each ASD child. Within-child ASD Living Biology is a research concept we coin here that advocates the integration of that prenatal and postnatal information to generate individualized and group-level explanations, clinically useful prognoses, and effective treatments for ASD. Towards this effort, we review recent studies through the lens of ASD Living Biology. This view supports the theory of ASD as a progressive prenatal dysregulation of brain growth, spanning nearly all of prenatal life. ASD begins as early as the 1 st and 2 nd trimester with disruption of cell proliferation and differentiation in the brain. It continues with disruption of migration, laminar organization, cell growth, neurite outgrowth, synaptogenesis, receptor and neurotransmitter development, and assembly of functional neural networks. Among the most commonly reported high confidence ASD genes, 94% express during prenatal life and affect these developmental processes, with a majority affecting proliferation/differentiation and synapse development, potentially influenced by disrupted PI3K-AKT/RAS-ERK signaling. ASD toddler-derived cellular experiments show dysregulation of cell cycle, excess cell proliferation, reduced neuronal and synaptic maturation, and a 6-fold decrease in synchronized neural network activity. Such defects underlie atypical experience-dependent development of large-scale social and communication networks. Furthermore, variation in dysregulation of cell proliferation correlates with variation in a child’s brain growth, due to either ASD brain undergrowth with fewer and more functionally impaired neurons, or overgrowth with an excess of poorly synchronized neurons. It remains unclear how genetic factors cause these changes in ASD. Maternal immune activation (MIA) offers one possible non-genetic etiology, exhibiting a similar progression with increased proliferation and ASD-like neurodevelopmental defects and behavioral deficits. To address the prenatal and early postnatal molecular, cellular and anatomical changes in ASD, entirely new treatment concepts are needed. This also requires coordinated in vivo and in vitro ASD living biology research to unravel the heterogeneity in etiology, severity, developmental timing, and neural system distribution of disrupted development. We advocate that through an ASD living biology approach, relationships between prenatal stages, early-age postnatal brain growth and function, clinical presentation and progression, and treatment outcome may be defined at the individual level, thus enabling the development of precision medicine approaches with truly beneficial interventions.

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          Most cited references133

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          De novo gene disruptions in children on the autistic spectrum.

          Exome sequencing of 343 families, each with a single child on the autism spectrum and at least one unaffected sibling, reveal de novo small indels and point substitutions, which come mostly from the paternal line in an age-dependent manner. We do not see significantly greater numbers of de novo missense mutations in affected versus unaffected children, but gene-disrupting mutations (nonsense, splice site, and frame shifts) are twice as frequent, 59 to 28. Based on this differential and the number of recurrent and total targets of gene disruption found in our and similar studies, we estimate between 350 and 400 autism susceptibility genes. Many of the disrupted genes in these studies are associated with the fragile X protein, FMRP, reinforcing links between autism and synaptic plasticity. We find FMRP-associated genes are under greater purifying selection than the remainder of genes and suggest they are especially dosage-sensitive targets of cognitive disorders. Copyright © 2012 Elsevier Inc. All rights reserved.
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            The cell biology of neurogenesis.

            During the development of the mammalian central nervous system, neural stem cells and their derivative progenitor cells generate neurons by asymmetric and symmetric divisions. The proliferation versus differentiation of these cells and the type of division are closely linked to their epithelial characteristics, notably, their apical-basal polarity and cell-cycle length. Here, we discuss how these features change during development from neuroepithelial to radial glial cells, and how this transition affects cell fate and neurogenesis.
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              Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations

              Evidence for the etiology of autism spectrum disorders (ASD) has consistently pointed to a strong genetic component complicated by substantial locus heterogeneity 1,2 . We sequenced the exomes of 20 sporadic cases of ASD and their parents, reasoning that these families would be enriched for de novo mutations of major effect. We identified 21 de novo mutations, of which 11 were protein-altering. Protein-altering mutations were significantly enriched for changes at highly conserved residues. We identified potentially causative de novo events in 4/20 probands, particularly among more severely affected individuals, in FOXP1, GRIN2B, SCN1A, and LAMC3. In the FOXP1 mutation carrier, we also observed a rare inherited CNTNAP2 mutation and provide functional support for a multihit model for disease risk 3 . Our results demonstrate that trio-based exome sequencing is a powerful approach for identifying novel candidate genes for ASD and suggest that de novo mutations may contribute substantially to the genetic risk for ASD.
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                Author and article information

                Journal
                9607835
                20545
                Mol Psychiatry
                Mol. Psychiatry
                Molecular psychiatry
                1359-4184
                1476-5578
                2 March 2018
                22 June 2018
                28 December 2018
                : 10.1038/s41380-018-0056-y
                Affiliations
                [1 ]Autism Center of Excellence, Department of Neuroscience, University of California, San Diego, 8110 La Jolla Shores Drive, Suite 201, La Jolla, CA 92093, USA
                [2 ]Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92161, USA
                [3 ]Department of Psychology, Center for Applied Neuroscience, University of Cyprus, Nicosia, Cyprus
                [4 ]Autism Research Centre, Department of Psychiatry, University of Cambridge, Cambridge, UK
                Author notes
                [* ] Corresponding Author: Eric Courchesne, ecourchesne@ 123456ucsd.edu , 8110 La Jolla Shores Dr., Suite 201, La Jolla, CA 92037
                Article
                NIHMS944713
                10.1038/s41380-018-0056-y
                6309606
                29934544
                563c1748-a657-4080-b134-b1fac8379efa

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                Article

                Molecular medicine
                asd,asd biology,autism,progressive prenatal disorder,prenatal development,fetal stages,cell proliferation,synapse development,high confidence asd genes,pleiotropy,maternal immune activation,ips cells

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