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      Keratoconus detection of changes using deep learning of colour-coded maps

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          Abstract

          Objective

          To evaluate the accuracy of convolutional neural networks technique (CNN) in detecting keratoconus using colour-coded corneal maps obtained by a Scheimpflug camera.

          Design

          Multicentre retrospective study.

          Methods and analysis

          We included the images of keratoconic and healthy volunteers’ eyes provided by three centres: Royal Liverpool University Hospital (Liverpool, UK), Sedaghat Eye Clinic (Mashhad, Iran) and The New Zealand National Eye Center (New Zealand). Corneal tomography scans were used to train and test CNN models, which included healthy controls. Keratoconic scans were classified according to the Amsler-Krumeich classification. Keratoconic scans from Iran were used as an independent testing set. Four maps were considered for each scan: axial map, anterior and posterior elevation map, and pachymetry map.

          Results

          A CNN model detected keratoconus versus health eyes with an accuracy of 0.9785 on the testing set, considering all four maps concatenated. Considering each map independently, the accuracy was 0.9283 for axial map, 0.9642 for thickness map, 0.9642 for the front elevation map and 0.9749 for the back elevation map. The accuracy of models in recognising between healthy controls and stage 1 was 0.90, between stages 1 and 2 was 0.9032, and between stages 2 and 3 was 0.8537 using the concatenated map.

          Conclusion

          CNN provides excellent detection performance for keratoconus and accurately grades different severities of disease using the colour-coded maps obtained by the Scheimpflug camera. CNN has the potential to be further developed, validated and adopted for screening and management of keratoconus.

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          Most cited references71

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          Comparing the Areas under Two or More Correlated Receiver Operating Characteristic Curves: A Nonparametric Approach

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            Grad-CAM: Visual Explanations from Deep Networks via Gradient-Based Localization

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              Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning

              Remarkable progress has been made in image recognition, primarily due to the availability of large-scale annotated datasets and deep convolutional neural networks (CNNs). CNNs enable learning data-driven, highly representative, hierarchical image features from sufficient training data. However, obtaining datasets as comprehensively annotated as ImageNet in the medical imaging domain remains a challenge. There are currently three major techniques that successfully employ CNNs to medical image classification: training the CNN from scratch, using off-the-shelf pre-trained CNN features, and conducting unsupervised CNN pre-training with supervised fine-tuning. Another effective method is transfer learning, i.e., fine-tuning CNN models pre-trained from natural image dataset to medical image tasks. In this paper, we exploit three important, but previously understudied factors of employing deep convolutional neural networks to computer-aided detection problems. We first explore and evaluate different CNN architectures. The studied models contain 5 thousand to 160 million parameters, and vary in numbers of layers. We then evaluate the influence of dataset scale and spatial image context on performance. Finally, we examine when and why transfer learning from pre-trained ImageNet (via fine-tuning) can be useful. We study two specific computer-aided detection (CADe) problems, namely thoraco-abdominal lymph node (LN) detection and interstitial lung disease (ILD) classification. We achieve the state-of-the-art performance on the mediastinal LN detection, and report the first five-fold cross-validation classification results on predicting axial CT slices with ILD categories. Our extensive empirical evaluation, CNN model analysis and valuable insights can be extended to the design of high performance CAD systems for other medical imaging tasks.
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                Author and article information

                Journal
                BMJ Open Ophthalmol
                BMJ Open Ophthalmol
                bmjophth
                bmjophth
                BMJ Open Ophthalmology
                BMJ Publishing Group (BMA House, Tavistock Square, London, WC1H 9JR )
                2397-3269
                2021
                13 July 2021
                : 6
                : 1
                : e000824
                Affiliations
                [1 ]Department of Eye and Vision Science, Institute of Life Course and Medical Sciences, University of Liverpool , Liverpool, UK
                [2 ]Department of Ophthalmology, St Paul’s Eye Unit, Royal Liverpool University Hospital , Liverpool, UK
                [3 ]departmentDepartment of Ophthalmology , New Zealand National Eye Centre, Faculty of Medical and Health Sciences, University of Auckland , Auckland, New Zealand
                [4 ]departmentCixi Institute of Biomedical Engineering , Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences , Ningbo, China
                [5 ]departmentEye Research Center , Mashhad University of Medical Sciences , Mashhad, Iran
                [6 ]Health Promotion Research Center, Zahedan University of Medical Sciences , Zahedan, Iran
                Author notes
                [Correspondence to ] Dr Vito Romano; Vito.Romano@ 123456liverpool.ac.uk
                Author information
                http://orcid.org/0000-0001-6952-5647
                http://orcid.org/0000-0002-5148-7643
                Article
                bmjophth-2021-000824
                10.1136/bmjophth-2021-000824
                8278890
                34337155
                542dd4c7-6cf3-4ee8-b3fb-56fcadac9224
                © Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.

                This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See:  http://creativecommons.org/licenses/by-nc/4.0/.

                History
                : 07 June 2021
                : 05 July 2021
                Categories
                Cornea and Ocular Surface
                1506
                2347
                Original research
                Custom metadata
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                imaging,cornea
                imaging, cornea

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