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      A role for Tau protein in maintaining ribosomal DNA stability and cytidine deaminase-deficient cell survival

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          Abstract

          Cells from Bloom’s syndrome patients display genome instability due to a defective BLM and the downregulation of cytidine deaminase. Here, we use a genome-wide RNAi-synthetic lethal screen and transcriptomic profiling to identify genes enabling BLM-deficient and/or cytidine deaminase-deficient cells to tolerate constitutive DNA damage and replication stress. We found a synthetic lethal interaction between cytidine deaminase and microtubule-associated protein Tau deficiencies. Tau is overexpressed in cytidine deaminase-deficient cells, and its depletion worsens genome instability, compromising cell survival. Tau is recruited, along with upstream-binding factor, to ribosomal DNA loci. Tau downregulation decreases upstream binding factor recruitment, ribosomal RNA synthesis, ribonucleotide levels, and affects ribosomal DNA stability, leading to the formation of a new subclass of human ribosomal ultrafine anaphase bridges. We describe here Tau functions in maintaining survival of cytidine deaminase-deficient cells, and ribosomal DNA transcription and stability. Moreover, our findings for cancer tissues presenting concomitant cytidine deaminase underexpression and Tau upregulation open up new possibilities for anti-cancer treatment.

          Abstract

          Cytidine deaminase (CDA) deficiency leads to genome instability. Here the authors find a synthetic lethal interaction between CDA and the microtubule-associated protein Tau deficiencies, and report that Tau depletion affects rRNA synthesis, ribonucleotide pool balance, and rDNA stability.

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          Most cited references53

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          Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.

          The cBioPortal for Cancer Genomics (http://cbioportal.org) provides a Web resource for exploring, visualizing, and analyzing multidimensional cancer genomics data. The portal reduces molecular profiling data from cancer tissues and cell lines into readily understandable genetic, epigenetic, gene expression, and proteomic events. The query interface combined with customized data storage enables researchers to interactively explore genetic alterations across samples, genes, and pathways and, when available in the underlying data, to link these to clinical outcomes. The portal provides graphical summaries of gene-level data from multiple platforms, network visualization and analysis, survival analysis, patient-centric queries, and software programmatic access. The intuitive Web interface of the portal makes complex cancer genomics profiles accessible to researchers and clinicians without requiring bioinformatics expertise, thus facilitating biological discoveries. Here, we provide a practical guide to the analysis and visualization features of the cBioPortal for Cancer Genomics.
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            The Bloom's syndrome gene product is homologous to RecQ helicases.

            The Bloom's syndrome (BS) gene, BLM, plays an important role in the maintenance of genomic stability in somatic cells. A candidate for BLM was identified by direct selection of a cDNA derived from a 250 kb segment of the genome to which BLM had been assigned by somatic crossover point mapping. In this novel mapping method, cells were used from persons with BS that had undergone intragenic recombination within BLM. cDNA analysis of the candidate gene identified a 4437 bp cDNA that encodes a 1417 amino acid peptide with homology to the RecQ helicases, a subfamily of DExH box-containing DNA and RNA helicases. The presence of chain-terminating mutations in the candidate gene in persons with BS proved that it was BLM.
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              Does the ribosome translate cancer?

              Ribosome biogenesis and translation control are essential cellular processes that are governed at numerous levels. Several tumour suppressors and proto-oncogenes have been found either to affect the formation of the mature ribosome or to regulate the activity of proteins known as translation factors. Disruption in one or more of the steps that control protein biosynthesis has been associated with alterations in the cell cycle and regulation of cell growth. Therefore, certain tumour suppressors and proto-oncogenes might regulate malignant progression by altering the protein synthesis machinery. Although many studies have correlated deregulation of protein biosynthesis with cancer, it remains to be established whether this translates directly into an increase in cancer susceptibility, and under what circumstances.
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                Author and article information

                Contributors
                mounira.amor@curie.fr
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                25 September 2017
                25 September 2017
                2017
                : 8
                : 693
                Affiliations
                [1 ]GRID grid.440907.e, Institut Curie, , PSL Research University, UMR 3348, ; Orsay, 91405 France
                [2 ]ISNI 0000 0001 2171 2558, GRID grid.5842.b, CNRS UMR 3348, , Centre Universitaire, ; Orsay, 91405 France
                [3 ]ISNI 0000 0001 2171 2558, GRID grid.5842.b, Université Paris Sud, Université Paris-Saclay, Centre Universitaire, UMR 3348, ; Orsay, 91405 France
                [4 ]ISNI 0000 0001 0288 2594, GRID grid.411430.3, Laboratoire de Biochimie et Toxicologie, Hospices Civils de Lyon, , Centre Hospitalier Lyon-Sud, ; Pierre-Bénite, 69495 France
                [5 ]ISNI 0000 0001 2172 4233, GRID grid.25697.3f, ISPB Faculté de Pharmacie, Laboratoire de Chimie Analytique, , Université de Lyon, Université Lyon 1, ; Lyon, 69008 France
                [6 ]ISNI 0000 0001 2172 4233, GRID grid.25697.3f, ISPB, Faculté de PharmacieLaboratoire de Toxicologie, , Université de Lyon, Université Lyon 1, ; Lyon, 69008 France
                [7 ]ISNI 0000 0001 0742 0364, GRID grid.168645.8, Howard Hughes Medical Institute, , University of Massachusetts Medical School, ; Worcester, Massachusetts 01605 USA
                [8 ]CEA-DRF-iRCM-LEFG-Genopole, Evry, 91057 France
                [9 ]CEA-DRF-iRCM-CIGEx, Fontenay-aux-Roses, 92265 France
                Author information
                http://orcid.org/0000-0002-2282-6693
                http://orcid.org/0000-0001-7376-1095
                http://orcid.org/0000-0003-3017-3298
                http://orcid.org/0000-0002-2686-2034
                http://orcid.org/0000-0003-4868-247X
                http://orcid.org/0000-0002-7713-167X
                Article
                633
                10.1038/s41467-017-00633-1
                5612969
                28947735
                53d6f8e3-5a6a-450c-a49d-ca8daad3fe97
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 4 January 2017
                : 14 July 2017
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