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      Evolution of diel activity patterns in skinks (Squamata: Scincidae), the world's second‐largest family of terrestrial vertebrates

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          Abstract

          Many animals have strict diel activity patterns, with unique adaptations for either diurnal or nocturnal activity. Diel activity is phylogenetically conserved, yet evolutionary shifts in diel activity occur and lead to important changes in an organism's morphology, physiology, and behavior. We use phylogenetic comparative methods to examine the evolutionary history of diel activity in skinks, one of the largest families of terrestrial vertebrates. We examine how diel patterns are associated with microhabitat, ambient temperatures, and morphology. We found support for a nondiurnal ancestral skink. Strict diurnality in crown group skinks only evolved during the Paleogene. Nocturnal habits are associated with fossorial activity, limb reduction and loss, and warm temperatures. Our results shed light on the evolution of diel activity patterns in a large radiation of terrestrial ectotherms and reveal how both intrinsic biotic and extrinsic abiotic factors can shape the evolution of animal activity patterns.

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          ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

          After more than fifteen years of existence, the R package ape has continuously grown its contents, and has been used by a growing community of users. The release of version 5.0 has marked a leap towards a modern software for evolutionary analyses. Efforts have been put to improve efficiency, flexibility, support for 'big data' (R's long vectors), ease of use and quality check before a new release. These changes will hopefully make ape a useful software for the study of biodiversity and evolution in a context of increasing data quantity.
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            Trends, rhythms, and aberrations in global climate 65 Ma to present.

            Since 65 million years ago (Ma), Earth's climate has undergone a significant and complex evolution, the finer details of which are now coming to light through investigations of deep-sea sediment cores. This evolution includes gradual trends of warming and cooling driven by tectonic processes on time scales of 10(5) to 10(7) years, rhythmic or periodic cycles driven by orbital processes with 10(4)- to 10(6)-year cyclicity, and rare rapid aberrant shifts and extreme climate transients with durations of 10(3) to 10(5) years. Here, recent progress in defining the evolution of global climate over the Cenozoic Era is reviewed. We focus primarily on the periodic and anomalous components of variability over the early portion of this era, as constrained by the latest generation of deep-sea isotope records. We also consider how this improved perspective has led to the recognition of previously unforeseen mechanisms for altering climate.
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              phytools: an R package for phylogenetic comparative biology (and other things)

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                Author and article information

                Contributors
                alex.slavenko1@gmail.com
                Journal
                Evolution
                Evolution
                10.1111/(ISSN)1558-5646
                EVO
                Evolution; International Journal of Organic Evolution
                John Wiley and Sons Inc. (Hoboken )
                0014-3820
                1558-5646
                16 May 2022
                June 2022
                : 76
                : 6 ( doiID: 10.1111/evo.v76.6 )
                : 1195-1208
                Affiliations
                [ 1 ] School of Biosciences University of Sheffield Sheffield South Yorkshire United Kingdom
                [ 2 ] School of Zoology Tel Aviv University Tel Aviv Israel
                [ 3 ] School of Biological Sciences Monash University Clayton Victoria Australia
                [ 4 ] Sydney School of Veterinary Science B01 University of Sydney New South Wales Australia
                [ 5 ] Australian Museum Research Institute The Australian Museum Sydney New South Wales Australia
                [ 6 ] The Steinhardt Museum of Natural History Tel Aviv Israel
                Author notes
                Author information
                https://orcid.org/0000-0002-3265-7715
                Article
                EVO14482
                10.1111/evo.14482
                9322454
                35355258
                53bad4a1-daa8-480f-94fc-998d1b3d4272
                © 2022 The Authors. Evolution published by Wiley Periodicals LLC on behalf of The Society for the Study of Evolution.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.

                History
                : 07 March 2022
                : 11 September 2021
                : 11 March 2022
                Page count
                Figures: 3, Tables: 3, Pages: 14, Words: 9803
                Categories
                Original Article
                Original Article
                Custom metadata
                2.0
                June 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.1.7 mode:remove_FC converted:26.07.2022

                Evolutionary Biology
                activity times,ancestral state reconstruction,macroevolution,mcmcglmm,phylogenetic ordinal regression,scincidae

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