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      Non‐enzymatic glycolysis and pentose phosphate pathway‐like reactions in a plausible Archean ocean

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          Abstract

          The reaction sequences of central metabolism, glycolysis and the pentose phosphate pathway provide essential precursors for nucleic acids, amino acids and lipids. However, their evolutionary origins are not yet understood. Here, we provide evidence that their structure could have been fundamentally shaped by the general chemical environments in earth's earliest oceans. We reconstructed potential scenarios for oceans of the prebiotic Archean based on the composition of early sediments. We report that the resultant reaction milieu catalyses the interconversion of metabolites that in modern organisms constitute glycolysis and the pentose phosphate pathway. The 29 observed reactions include the formation and/or interconversion of glucose, pyruvate, the nucleic acid precursor ribose‐5‐phosphate and the amino acid precursor erythrose‐4‐phosphate, antedating reactions sequences similar to that used by the metabolic pathways. Moreover, the Archean ocean mimetic increased the stability of the phosphorylated intermediates and accelerated the rate of intermediate reactions and pyruvate production. The catalytic capacity of the reconstructed ocean milieu was attributable to its metal content. The reactions were particularly sensitive to ferrous iron Fe( II), which is understood to have had high concentrations in the Archean oceans. These observations reveal that reaction sequences that constitute central carbon metabolism could have been constrained by the iron‐rich oceanic environment of the early Archean. The origin of metabolism could thus date back to the prebiotic world.

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          Atmospheric influence of Earth's earliest sulfur cycle

          Mass-independent isotopic signatures for delta(33)S, delta(34)S, and delta(36)S from sulfide and sulfate in Precambrian rocks indicate that a change occurred in the sulfur cycle between 2090 and 2450 million years ago (Ma). Before 2450 Ma, the cycle was influenced by gas-phase atmospheric reactions. These atmospheric reactions also played a role in determining the oxidation state of sulfur, implying that atmospheric oxygen partial pressures were low and that the roles of oxidative weathering and of microbial oxidation and reduction of sulfur were minimal. Atmospheric fractionation processes should be considered in the use of sulfur isotopes to study the onset and consequences of microbial fractionation processes in Earth's early history.
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            Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

            At some stage in the origin of life, an informational polymer must have arisen by purely chemical means. According to one version of the 'RNA world' hypothesis this polymer was RNA, but attempts to provide experimental support for this have failed. In particular, although there has been some success demonstrating that 'activated' ribonucleotides can polymerize to form RNA, it is far from obvious how such ribonucleotides could have formed from their constituent parts (ribose and nucleobases). Ribose is difficult to form selectively, and the addition of nucleobases to ribose is inefficient in the case of purines and does not occur at all in the case of the canonical pyrimidines. Here we show that activated pyrimidine ribonucleotides can be formed in a short sequence that bypasses free ribose and the nucleobases, and instead proceeds through arabinose amino-oxazoline and anhydronucleoside intermediates. The starting materials for the synthesis-cyanamide, cyanoacetylene, glycolaldehyde, glyceraldehyde and inorganic phosphate-are plausible prebiotic feedstock molecules, and the conditions of the synthesis are consistent with potential early-Earth geochemical models. Although inorganic phosphate is only incorporated into the nucleotides at a late stage of the sequence, its presence from the start is essential as it controls three reactions in the earlier stages by acting as a general acid/base catalyst, a nucleophilic catalyst, a pH buffer and a chemical buffer. For prebiotic reaction sequences, our results highlight the importance of working with mixed chemical systems in which reactants for a particular reaction step can also control other steps.
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              Prebiotic chemistry and the origin of the RNA world.

              The demonstration that ribosomal peptide synthesis is a ribozyme-catalyzed reaction makes it almost certain that there was once an RNA World. The central problem for origin-of-life studies, therefore, is to understand how a protein-free RNA World became established on the primitive Earth. We first review the literature on the prebiotic synthesis of the nucleotides, the nonenzymatic synthesis and copying of polynucleotides, and the selection of ribozyme catalysts of a kind that might have facilitated polynucleotide replication. This leads to a brief outline of the Molecular Biologists' Dream, an optimistic scenario for the origin of the RNA World. In the second part of the review we point out the many unresolved problems presented by the Molecular Biologists' Dream. This in turn leads to a discussion of genetic systems simpler than RNA that might have "invented" RNA. Finally, we review studies of prebiotic membrane formation.
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                Author and article information

                Journal
                Mol Syst Biol
                Mol. Syst. Biol
                10.1002/(ISSN)1744-4292
                MSB
                msb
                Molecular Systems Biology
                European Molecular Biology Organization
                1744-4292
                04 April 2014
                25 April 2014
                : 10
                : 4 ( doiID: 10.1002/msb.v10.4 )
                : 725
                Affiliations
                [ 1 ] Department of Biochemistry and Cambridge Systems Biology CentreUniversity of Cambridge CambridgeUK
                [ 2 ] Department of Earth SciencesUniversity of Cambridge CambridgeUK
                [ 3 ] Division of Physiology and MetabolismMRC National Institute for Medical Research Mill Hill LondonUK
                Author notes
                [*] [* ]Corresponding author. Tel: +44 1223 761346; Fax: +44 1223 766002; E‐mail: mr559@ 123456cam.ac.uk
                Article
                MSB145228
                10.1002/msb.20145228
                4023395
                24771084
                52f39ec3-7664-4dc5-8043-b1d054c72c42
                © 2014 EMBO© 2014 The Authors. Published under the terms of the CC BY license

                This is an open access article under the terms of the Creative Commons Attribution 4.0 License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 24 February 2014
                : 11 March 2014
                : 18 March 2014
                Page count
                Pages: 12
                Funding
                Funded by: Isaac Newton Trust
                Award ID: RG 68998
                Funded by: Wellcome Trust
                Award ID: RG 093735/Z/10/Z
                Funded by: Royal Society
                Award ID: RG60279
                Funded by: ERC
                Award ID: 260809
                Award ID: 307582
                Categories
                Embo15
                Embo21
                Article
                Articles
                Custom metadata
                2.0
                msb145228
                April 2014
                Converter:WILEY_ML3GV2_TO_NLM version:4.0.5 mode:remove_FC converted:12.05.2014

                Quantitative & Systems biology
                archean ocean,evolution of metabolism,glycolysis,non‐enzymatic catalysts,pentose phosphate pathway

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