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      Predictive analytics in health care: how can we know it works?

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          Abstract

          There is increasing awareness that the methodology and findings of research should be transparent. This includes studies using artificial intelligence to develop predictive algorithms that make individualized diagnostic or prognostic risk predictions. We argue that it is paramount to make the algorithm behind any prediction publicly available. This allows independent external validation, assessment of performance heterogeneity across settings and over time, and algorithm refinement or updating. Online calculators and apps may aid uptake if accompanied with sufficient information. For algorithms based on “black box” machine learning methods, software for algorithm implementation is a must. Hiding algorithms for commercial exploitation is unethical, because there is no possibility to assess whether algorithms work as advertised or to monitor when and how algorithms are updated. Journals and funders should demand maximal transparency for publications on predictive algorithms, and clinical guidelines should only recommend publicly available algorithms.

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          Most cited references18

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          A systematic review shows no performance benefit of machine learning over logistic regression for clinical prediction models

          The objective of this study was to compare performance of logistic regression (LR) with machine learning (ML) for clinical prediction modeling in the literature.
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            A calibration hierarchy for risk models was defined: from utopia to empirical data.

            Calibrated risk models are vital for valid decision support. We define four levels of calibration and describe implications for model development and external validation of predictions.
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              Reproducible Research Practices and Transparency across the Biomedical Literature

              There is a growing movement to encourage reproducibility and transparency practices in the scientific community, including public access to raw data and protocols, the conduct of replication studies, systematic integration of evidence in systematic reviews, and the documentation of funding and potential conflicts of interest. In this survey, we assessed the current status of reproducibility and transparency addressing these indicators in a random sample of 441 biomedical journal articles published in 2000–2014. Only one study provided a full protocol and none made all raw data directly available. Replication studies were rare (n = 4), and only 16 studies had their data included in a subsequent systematic review or meta-analysis. The majority of studies did not mention anything about funding or conflicts of interest. The percentage of articles with no statement of conflict decreased substantially between 2000 and 2014 (94.4% in 2000 to 34.6% in 2014); the percentage of articles reporting statements of conflicts (0% in 2000, 15.4% in 2014) or no conflicts (5.6% in 2000, 50.0% in 2014) increased. Articles published in journals in the clinical medicine category versus other fields were almost twice as likely to not include any information on funding and to have private funding. This study provides baseline data to compare future progress in improving these indicators in the scientific literature.
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                Author and article information

                Journal
                J Am Med Inform Assoc
                J Am Med Inform Assoc
                jamia
                Journal of the American Medical Informatics Association : JAMIA
                Oxford University Press
                1067-5027
                1527-974X
                December 2019
                02 August 2019
                02 August 2019
                : 26
                : 12
                : 1651-1654
                Affiliations
                [1 ] Department of Development and Regeneration, KU Leuven, Leuven, Belgium
                [2 ] Department of Biomedical Data Sciences, Leiden University Medical Center (LUMC), Leiden, The Netherlands
                [3 ] Department of Obstetrics and Gynaecology, University Hospitals Leuven, Leuven, Belgium
                [4 ] Centre for Statistics in Medicine, Nuffield, Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, University of Oxford, UK
                [5 ] Oxford University Hospitals NHS Foundation Trust, Oxford, UK
                Author notes
                Corresponding Author: Ben Van Calster, Department of Development and Regeneration, KU Leuven, Herestraat 49 box 805, 3000 Leuven, Belgium ( ben.vancalster@ 123456kuleuven.be )
                Author information
                http://orcid.org/0000-0003-1613-7450
                http://orcid.org/0000-0002-2772-2316
                Article
                ocz130
                10.1093/jamia/ocz130
                6857503
                31373357
                518ced8a-18f8-4ef5-b5e3-e6b07a221c5f
                © The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence ( http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contactjournals.permissions@oup.com

                History
                : 16 January 2019
                : 04 June 2019
                : 04 July 2019
                Page count
                Pages: 4
                Funding
                Funded by: Research Foundation 10.13039/100005930
                Categories
                Perspective

                Bioinformatics & Computational biology
                artificial intelligence,external validation,machine learning,model performance,predictive analytics

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