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      Efficacy of bacteriophage treatment against carbapenem-resistant Acinetobacter baumannii in Galleria mellonella larvae and a mouse model of acute pneumonia

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          Abstract

          Background

          Acinetobacter baumannii is an opportunistic pathogen that causes serious nosocomial infection in intensive care units. In particular, carbapenem-resistant A. baumannii (CRAB) strains have been increasing in the past decade, and they have caused major medical problems worldwide. In this study, a novel A. baumannii lytic phage, the YMC 13/03/R2096 ABA BP (phage Βϕ-R2096), which specifically causes the lysis of CRAB strains, was characterized in detail in vitro and in silico, and the in vivo effectiveness of phage therapy was evaluated using Galleria mellonella and a mouse model of acute pneumonia.

          Results

          The A. baumannii phage Βϕ-R2096 was isolated from sewage water using CRAB clinical strains selected from patients at a university hospital in South Korea. The complete genome of the phage Βϕ-R2096, which belongs to the Myoviridae family, was analyzed. Phage Βϕ-R2096 inhibited bacterial growth in a dose-dependent manner and exhibited high bacteriolytic activity at MOI = 10. In the evaluation of its therapeutic potential against CRAB clinical isolates using two in vivo models, phage Βϕ-R2096 increased the survival rates of both G. mellonella larvae (from 0 to 50% at 24 h) and mice (from 30% with MOI = 0.1 to 100% with MOI = 10 for 12 days) in post-infection of CRAB. In particular, phage Βϕ-R2096 strongly ameliorated histologic damage to infected lungs, with bacterial clearance in the lungs observed on day 3 postinfection in the mouse acute pneumonia model. Moreover, in vivo studies revealed no mortality or serious side effects in phage-treated groups.

          Conclusion

          The results of this study strongly suggest that phage Βϕ-R2096, a novel A. baumannii lytic phage, could be an alternative antibacterial agent to control CRAB infections. This study is the first report to compare in vivo evaluations ( G. mellonella larvae and a mouse acute pneumonia model) of the therapeutic efficacy of a phage against CRAB infections.

          Electronic supplementary material

          The online version of this article (10.1186/s12866-019-1443-5) contains supplementary material, which is available to authorized users.

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          Most cited references64

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          GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

          J Besemer (2001)
          Improving the accuracy of prediction of gene starts is one of a few remaining open problems in computer prediction of prokaryotic genes. Its difficulty is caused by the absence of relatively strong sequence patterns identifying true translation initiation sites. In the current paper we show that the accuracy of gene start prediction can be improved by combining models of protein-coding and non-coding regions and models of regulatory sites near gene start within an iterative Hidden Markov model based algorithm. The new gene prediction method, called GeneMarkS, utilizes a non-supervised training procedure and can be used for a newly sequenced prokaryotic genome with no prior knowledge of any protein or rRNA genes. The GeneMarkS implementation uses an improved version of the gene finding program GeneMark.hmm, heuristic Markov models of coding and non-coding regions and the Gibbs sampling multiple alignment program. GeneMarkS predicted precisely 83.2% of the translation starts of GenBank annotated Bacillus subtilis genes and 94.4% of translation starts in an experimentally validated set of Escherichia coli genes. We have also observed that GeneMarkS detects prokaryotic genes, in terms of identifying open reading frames containing real genes, with an accuracy matching the level of the best currently used gene detection methods. Accurate translation start prediction, in addition to the refinement of protein sequence N-terminal data, provides the benefit of precise positioning of the sequence region situated upstream to a gene start. Therefore, sequence motifs related to transcription and translation regulatory sites can be revealed and analyzed with higher precision. These motifs were shown to possess a significant variability, the functional and evolutionary connections of which are discussed.
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            Acinetobacter spp. as nosocomial pathogens: microbiological, clinical, and epidemiological features.

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              Colistin resistance of Acinetobacter baumannii: clinical reports, mechanisms and antimicrobial strategies.

              Colistin is the last resort for treatment of multidrug-resistant Acinetobacter baumannii. Unfortunately, resistance to colistin has been reported all over the world. The highest resistance rate was reported in Asia, followed by Europe. The heteroresistance rate of A. baumannii to colistin is generally higher than the resistance rate. The mechanism of resistance might be loss of lipopolysaccharide or/and the PmrAB two-component system. Pharmacokinetic/pharmacodynamic studies revealed that colistin monotherapy is unable to prevent resistance, and combination therapy might be the best antimicrobial strategy against colistin-resistant A. baumannii. Colistin/rifampicin and colistin/carbapenem are the most studied combinations that showed promising results in vitro, in vivo and in the clinic. New peptides showing good activity against colistin-resistant A. baumannii are also being investigated.
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                Author and article information

                Contributors
                pulipisle05@hanmail.net
                jonpark@chonnam.ac.kr
                82-2-2228-2446 , deyong@yuhs.ac
                Journal
                BMC Microbiol
                BMC Microbiol
                BMC Microbiology
                BioMed Central (London )
                1471-2180
                2 April 2019
                2 April 2019
                2019
                : 19
                : 70
                Affiliations
                [1 ]Department of Laboratory Medicine and Research Institute of Bacterial Resistance, Y, Seoul, Republic of Korea
                [2 ]ISNI 0000 0001 0356 9399, GRID grid.14005.30, Laboratory Animal Medicine, College of Veterinary Medicine, , Chonnam National University, ; Gwang-ju, 61186 Republic of Korea
                [3 ]ISNI 0000 0004 0470 5454, GRID grid.15444.30, Department of Laboratory Medicine and Research Institute of Bacterial Resistance, , Yonsei University College of Medicine, ; 50-1Yonsei-ro, Seodaemun-gu, Seoul, 03722 South Korea
                Author information
                http://orcid.org/0000-0002-1225-8477
                Article
                1443
                10.1186/s12866-019-1443-5
                6444642
                30940074
                50e370fa-8a54-42eb-9674-ce4467a02cd3
                © The Author(s). 2019

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 9 September 2018
                : 25 March 2019
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100003725, the Basic Science Research Program through the National Research Foundation of Korea;
                Award ID: NRF-2017R1D1A1B03034730
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100003621, Ministry of Science, ICT and Future Planning;
                Award ID: Grant Number H-GUARD_2014M3A6B2060509
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100008005, Yonsei University College of Medicine;
                Award ID: 6-2014-0039
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100003725, National Research Foundation of Korea;
                Award ID: 2017M3A7B4039936
                Award Recipient :
                Categories
                Research Article
                Custom metadata
                © The Author(s) 2019

                Microbiology & Virology
                bacteriophage,carbapenem,acinetobacter baumannii,myoviridae,phage therapy,galleria mellonella,mouse acute pneumonia

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