3
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      EMDS-6: Environmental Microorganism Image Dataset Sixth Version for Image Denoising, Segmentation, Feature Extraction, Classification, and Detection Method Evaluation

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Environmental microorganisms (EMs) are ubiquitous around us and have an important impact on the survival and development of human society. However, the high standards and strict requirements for the preparation of environmental microorganism (EM) data have led to the insufficient of existing related datasets, not to mention the datasets with ground truth (GT) images. This problem seriously affects the progress of related experiments. Therefore, This study develops the Environmental Microorganism Dataset Sixth Version (EMDS-6), which contains 21 types of EMs. Each type of EM contains 40 original and 40 GT images, in total 1680 EM images. In this study, in order to test the effectiveness of EMDS-6. We choose the classic algorithms of image processing methods such as image denoising, image segmentation and object detection. The experimental result shows that EMDS-6 can be used to evaluate the performance of image denoising, image segmentation, image feature extraction, image classification, and object detection methods. EMDS-6 is available at the https://figshare.com/articles/dataset/EMDS6/17125025/1.

          Related collections

          Most cited references51

          • Record: found
          • Abstract: not found
          • Article: not found

          A Threshold Selection Method from Gray-Level Histograms

            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks.

            State-of-the-art object detection networks depend on region proposal algorithms to hypothesize object locations. Advances like SPPnet [1] and Fast R-CNN [2] have reduced the running time of these detection networks, exposing region proposal computation as a bottleneck. In this work, we introduce a Region Proposal Network (RPN) that shares full-image convolutional features with the detection network, thus enabling nearly cost-free region proposals. An RPN is a fully convolutional network that simultaneously predicts object bounds and objectness scores at each position. The RPN is trained end-to-end to generate high-quality region proposals, which are used by Fast R-CNN for detection. We further merge RPN and Fast R-CNN into a single network by sharing their convolutional features-using the recently popular terminology of neural networks with 'attention' mechanisms, the RPN component tells the unified network where to look. For the very deep VGG-16 model [3], our detection system has a frame rate of 5fps (including all steps) on a GPU, while achieving state-of-the-art object detection accuracy on PASCAL VOC 2007, 2012, and MS COCO datasets with only 300 proposals per image. In ILSVRC and COCO 2015 competitions, Faster R-CNN and RPN are the foundations of the 1st-place winning entries in several tracks. Code has been made publicly available.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Very Deep Convolutional Networks for Large-Scale Image Recognition

              In this work we investigate the effect of the convolutional network depth on its accuracy in the large-scale image recognition setting. Our main contribution is a thorough evaluation of networks of increasing depth using an architecture with very small (3x3) convolution filters, which shows that a significant improvement on the prior-art configurations can be achieved by pushing the depth to 16-19 weight layers. These findings were the basis of our ImageNet Challenge 2014 submission, where our team secured the first and the second places in the localisation and classification tracks respectively. We also show that our representations generalise well to other datasets, where they achieve state-of-the-art results. We have made our two best-performing ConvNet models publicly available to facilitate further research on the use of deep visual representations in computer vision.
                Bookmark

                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                25 April 2022
                2022
                : 13
                : 829027
                Affiliations
                [1] 1Microscopic Image and Medical Image Analysis Group, College of Medicine and Biological Information Engineering, Northeastern University , Shenyang, China
                [2] 2School of Computer Science and Engineering, University of New South Wales , Sydney, NSW, Australia
                [3] 3Department of Radiology, Shengjing Hospital, China Medical University , Shenyang, China
                [4] 4School of Control Engineering, Chengdu University of Information Technology , Chengdu, China
                [5] 5School of Arts and Design, Liaoning Petrochemical University , Fushun, China
                [6] 6Institute of Medical Informatics, University of Lübeck , Lübeck, Germany
                Author notes

                Edited by: George Tsiamis, University of Patras, Greece

                Reviewed by: Muhammad Hassan Khan, University of the Punjab, Pakistan; Elias Asimakis, University of Patras, Greece

                *Correspondence: Chen Li lichen201096@ 123456hotmail.com

                This article was submitted to Systems Microbiology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2022.829027
                9083104
                35547119
                4fae672b-8a7b-442d-94c4-6206e5d8ba8e
                Copyright © 2022 Zhao, Li, Rahaman, Xu, Ma, Yang, Sun, Jiang, Xu and Grzegorzek.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 04 December 2021
                : 28 March 2022
                Page count
                Figures: 4, Tables: 13, Equations: 4, References: 51, Pages: 12, Words: 7214
                Funding
                Funded by: National Natural Science Foundation of China, doi 10.13039/501100001809;
                Funded by: Fundamental Research Funds for the Central Universities, doi 10.13039/501100012226;
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                environmental microorganism,image denoising,image segmentation,feature extraction,image classification,object detection

                Comments

                Comment on this article