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      Draft Genome Sequence of Raoultella ornithinolytica P079F W, Isolated from the Feces of a Preterm Infant

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          Abstract

          Here, we describe the draft genome sequence of Raoultella ornithinolytica P079F W, isolated from the feces of an infant residing in a neonatal intensive care unit during an ongoing study to characterize the neonate gut microbiota. P079F W will be used in studies investigating the role of the microbiome in neonatal infections.

          ABSTRACT

          Here, we describe the draft genome sequence of Raoultella ornithinolytica P079F W, isolated from the feces of an infant residing in a neonatal intensive care unit during an ongoing study to characterize the neonate gut microbiota. P079F W will be used in studies investigating the role of the microbiome in neonatal infections.

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          Emerging role of Raoultella ornithinolytica in human infections: a series of cases and review of the literature.

          Piseth Seng, Boushab Mohamed Boushab, Fanny Romain … (2016)
          Raoultella ornithinolytica is known to inhabit aquatic environments. The clinical features and outcomes of human infections caused by R. ornithinolytica have been reported for only a limited number of cases.
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            Preterm Infant-Associated Clostridium tertium , Clostridium cadaveris , and Clostridium paraputrificum Strains: Genomic and Evolutionary Insights

            Raymond Kiu, Shabhonam Caim, Cristina Alcon-Giner … (2017)
            Abstract Clostridium species (particularly Clostridium difficile, Clostridium botulinum, Clostridium tetani and Clostridium perfringens) are associated with a range of human and animal diseases. Several other species including Clostridium tertium, Clostridium cadaveris, and Clostridium paraputrificum have also been linked with sporadic human infections, however there is very limited, or in some cases, no genomic information publicly available. Thus, we isolated one C. tertium strain, one C. cadaveris strain and three C. paraputrificum strains from preterm infants residing within neonatal intensive care units and performed Whole Genome Sequencing (WGS) using Illumina HiSeq. In this report, we announce the open availability of the draft genomes: C. tertium LH009, C. cadaveris LH052, C. paraputrificum LH025, C. paraputrificum LH058, and C. paraputrificum LH141. These genomes were checked for contamination in silico to ensure purity, and we confirmed species identity and phylogeny using both 16S rRNA gene sequences (from PCR and in silico) and WGS-based approaches. Average Nucleotide Identity (ANI) was used to differentiate genomes from their closest relatives to further confirm speciation boundaries. We also analysed the genomes for virulence-related factors and antimicrobial resistance genes, and detected presence of tetracycline and methicillin resistance, and potentially harmful enzymes, including multiple phospholipases and toxins. The availability of genomic data in open databases, in tandem with our initial insights into the genomic content and virulence traits of these pathogenic Clostridium species, should enable the scientific community to further investigate the disease-causing mechanisms of these bacteria with a view to enhancing clinical diagnosis and treatment.
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              Raoultella ornithinolytica bacteremia in an infant with visceral heterotaxy.

              Nicole Mau, Lawrence Ross (2010)
              A case of Raoultella ornithinolytica bacteremia in an infant with visceral heterotaxy is reported. Physical examination was remarkable for markedly red skin flushing, not unlike that seen during histamine fish poisoning. R. ornithinolytica is a histamine-producing bacterium recently elucidated as a major cause of histamine fish poisoning. Only 2 other cases of human infection by R. ornithinolytica have been reported.
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                Author and article information

                Contributors
                Julie C. Dunning Hotopp: Role: Editor
                Journal
                Journal ID (nlm-ta): Microbiol Resour Announc
                Journal ID (iso-abbrev): Microbiol Resour Announc
                Journal ID (hwp): ga
                Journal ID (pmc): mra
                Journal ID (publisher-id): MRA
                Title: Microbiology Resource Announcements
                Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )
                ISSN (Electronic): 2576-098X
                Publication date (Electronic): 15 August 2019
                Publication date Collection: August 2019
                Volume: 8
                Issue: 33
                Electronic Location Identifier: e00493-19
                Affiliations
                [a ]Department of Surgery and Cancer, Imperial College London, London, United Kingdom
                [b ]Department of Biomedical Sciences, University of Westminster, London, United Kingdom
                [c ]Gut Microbes and Health Programme, Quadram Institute Bioscience, Norwich, United Kingdom
                [d ]Neonatal Intensive Care Unit, Norfolk and Norwich University Hospital, Norwich, United Kingdom
                [e ]Department of Biosciences, Nottingham Trent University, Nottingham, United Kingdom
                University of Maryland School of Medicine
                Author notes
                Address correspondence to Lindsay J. Hall, Lindsay.Hall@ 123456quadram.ac.uk , or Lesley Hoyles, lesley.hoyles@ 123456ntu.ac.uk .

                Citation Chen Y, Brook TC, Alcon-Giner C, Clarke P, Hall LJ, Hoyles L. 2019. Draft genome sequence of Raoultella ornithinolytica P079F W, isolated from the feces of a preterm infant. Microbiol Resour Announc 8:e00493-19. https://doi.org/10.1128/MRA.00493-19.

                Author information
                https://orcid.org/0000-0001-8938-5709
                https://orcid.org/0000-0002-6418-342X
                Article
                Publisher ID: MRA00493-19
                DOI: 10.1128/MRA.00493-19
                PMC ID: 6696637
                PubMed ID: 31416862
                SO-VID: 4fa5b06f-50eb-42bf-b026-f440a16e8396
                Copyright © Copyright © 2019 Chen et al.
                License:

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Date received : 14 May 2019
                Date accepted : 22 July 2019
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 17, Pages: 3, Words: 1711
                Funding
                Funded by: Microbiology Society, https://doi.org/10.13039/501100007901;
                Award ID: RVG16/3
                Award Recipient :
                Funded by: University of Westminster, https://doi.org/10.13039/501100001319;
                Award Recipient :
                Funded by: Wellcome Trust, https://doi.org/10.13039/100004440;
                Award ID: 100/974/C/13/Z
                Award Recipient :
                Funded by: UK Research and Innovation | Biotechnology and Biological Sciences Research Council (BBSRC), https://doi.org/10.13039/501100000268;
                Award ID: Institute Strategic Programme grant BB/R012490/1
                Award Recipient :
                Funded by: UK Research and Innovation | Biotechnology and Biological Sciences Research Council (BBSRC), https://doi.org/10.13039/501100000268;
                Award ID: doctoral training grant BB/M011216/1
                Award Recipient :
                Funded by: UK Research and Innovation | Medical Research Council (MRC), https://doi.org/10.13039/501100000265;
                Award ID: MR/L01632X/1
                Award Recipient :
                Categories
                Subject: Genome Sequences
                Custom metadata
                cover-date August 2019

                Data availability:

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