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Abstract
The COVID-19 pandemic, caused by the coronavirus SARS-CoV-2, now affects countries
on six continents. Reported case numbers are certainly underestimates given the low
rates of testing in many countries, a virus with a basic reproductive value (R0) of
apparently over 2.2, and evidence of viral shedding from asymptomatic infected people
[1]. Social distancing, hand hygiene and community mitigation measures are recommended
to contain this pandemic [2]. These measures aim at ‘flattening the curve’ of the
initial wave of infections ripping through the various countries and regions, leading
to an acute overburdening of health care services. Even if in part successful, many
researchers are predicting a “new wave” of COVID-19 infections. Whilst massive efforts
are underway to change this, there is currently no vaccine, no prophylaxis, few proposed
specific treatments and there are to date, naturally, few data on the sequelae or
longer-term outcomes of the infection. It is unknown whether or not those second waves
will occur and if they do, will they occur in persons who have already been exposed
to the SARS-CoV-2 virus or in naïve persons? All forecasts regarding herd immunity
remain speculations. Countries, such as China, that have passed the epidemic peak
are now importing fresh cases from countries more recently affected. For health care
workers (HCW) on the frontline and for patients with severe illness, the urgent search
for a treatment is on. Until a vaccine is available, it would also be valuable to
have an option for prophylaxis of HCW enabling the protection of those on the frontline.
Furthermore, a therapy would expedite viral load reduction and allow HCW to return
to work faster. The need for a treatment is particularly urgent, as a therapy could
reduce the time spent in intensive care units and free up beds. A candidate therapy
could be a single drug or substance or a combination and these candidates should preferably
be repurposed drugs.
Some new papers have reported on therapy options. A Chinese team published results
of a study demonstrating that chloroquine, an antimalarial, and its hydroxyl analogue,
hydroxychloroquine, inhibit SARS-CoV-2 in vitro with hydroxychloroquine (EC50 = 0.72%μM)
found to be more potent than chloroquine (EC50 = 5.47%μM) [3]. A French paper reporting
on the use of drug combinations in infected patients highlighted the possibility that
hydroxychloroquine is effective in the treatment of COVID-19 patients [4] particularly
in combination with azithromycin. In this study, with a limited number of patients,
hydroxychloroquine with azithromycin was shown to clear viral nasopharyngeal carriage
of SARS-CoV-2 in just three to six days. These results are important because a recent
paper has shown that the mean duration of viral shedding in patients suffering from
COVID-19 in China was up to 20 days and even 37 days for the longest duration [5].
Antimalarials are potential candidates to be “repurposed” as they have been widely
studied and evaluated in both the therapy and prophylaxis settings. Furthermore, they
have been used in a broad range of age groups and in persons with co-morbidities.
There is a body of evidence available regarding drug/drug interactions, metabolic
pathways, pharmacokinetics, posology and galenics. Formulations are available that
would suit both ambulatory and stationary settings. These include tablet forms, rectal
formulations and solutions for injection. We have well controlled studies evaluating
treatment and the tolerability of chemoprophylaxis [6]. There are a variety of classes
of antimalarial medications, including artemisinin derivatives (derived from the plant
Artemisia annua), quinine and related drugs (such as mefloquine, halofantrine, lumefantrine),
aminoquinolines (such as chloroquine, amodiaquine, primaquine) and a mixed group of
compounds with formidable antimalarial potential (including doxycycline, atovaquone,
sulfonamides). The story of the rediscovery of the sesquiterpene lactone, artemisinin
in China, an active principle derived from plants described as “fever reducing” in
ancient pharmacopoeia, and repurposing this class as antimalarials is a classical
case of using existing treatments for new indications. The World Health Organisation
(WHO) can be applauded for the launch of the SOLIDARITY study [7] that will focus
on collating robust, clinical evidence on a number of potential COVID-19 therapeutics.
Chloroquine and hydroxychloroquine are included in the panel of drugs under investigation.
Apart from antimalarials, some antivirals have also shown promise against the novel
coronaviruses: In vitro studies have shown that the antiviral remdesivir can inhibit
coronaviruses such as SARS-CoV and MERS-CoV [8]. In an in vitro test using human airway
epithelial cell cultures, remdesivir was effective against other coronaviruses [9].
One study showed that remdesivir and interferon beta were superior to lopinavir, ritonavir
and interferon beta both in vitro and in a MERS-CoV mouse model. Remdesivir, administered
alone or in combination with chloroquine [10] is also considered to be effective and
has been used with success. Major multicentre trials to systematically assess its
efficacy and safety in moderate and severe COVID-19 disease are currently underway
(ClinicalTrials.gov Identifiers: NCT04292899; NCT04292730 and others).
Beside several antivirals and antimalarials, there are other pharmacological classes
that must be considered for use against SARS-CoV-2. For instance, teicoplanin was
proposed as a potential treatment in COVID-19 patients and has already shown inhibitory
effects on cell entry of Ebola virus, SARS-CoV and MERS-CoV in the past. Its in vitro
activity against SARS-CoV-2 was reported by Zhang et al. [11]. However, it has to
be acknowledged that in this and other cases, it is a long, expensive and time-consuming
way, even if there is an accelerated avenue to expedite promising developments, from
in vitro assays indicative of antiviral effects to the initiation steps of safety
and efficacy assessments in humans, Finding compounds that can block the entry of
the virus into the cell could be an important approach to find potential therapies
for COVID-19. Recent research has also examined the mechanism used by SARS-CoV-2 for
facilitating cell entry [12]. This cell entry seems to be crucial for the virus to
infect the cell and uses angiotensin-converting enzyme 2 (ACE2) [12] as well as the
transmembrane protease, serine 2 (TMPRSS2), that are both expressed on human cells.
This entry was already described in the past for SARS-CoV. SARS-CoV-2 binds with its
own spike glycoprotein to ACE2 and uses the serine protease TMPRSS2 for priming. This
allows for easier fusion of viral and cellular membranes. ACE2 is expressed in lungs,
heart, kidneys and intestine and is known to convert angiotensin II into angiotensin
(1-7), thus effecting blood pressure and cardiac function.
An important advantage of reviewing, evaluating and condensing evidence on available
molecules, active principles or drugs is that this approach brings important key,
existing medical data to the fore. It will not just be enough to have candidate drugs
that work in vitro against SARS-CoV-2. It is essential that the identified candidate
or combination of candidates have a good safety profile, have matching pharmacokinetics
and, if possible, different viral targets. If antimalarials can be repurposed for
COVID-19, travel and tropical medicine experts can bring their expertise to the table
as antimalarials are the “bread and butter” of travel medicine and there is a wealth
of experience and knowledge on the use and tolerability of these drugs in all ages
and in persons with co-morbidities. It is time to bring this knowledge to a new front
in the war on COVID-19.
Summary Background Since December, 2019, Wuhan, China, has experienced an outbreak of coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Epidemiological and clinical characteristics of patients with COVID-19 have been reported but risk factors for mortality and a detailed clinical course of illness, including viral shedding, have not been well described. Methods In this retrospective, multicentre cohort study, we included all adult inpatients (≥18 years old) with laboratory-confirmed COVID-19 from Jinyintan Hospital and Wuhan Pulmonary Hospital (Wuhan, China) who had been discharged or had died by Jan 31, 2020. Demographic, clinical, treatment, and laboratory data, including serial samples for viral RNA detection, were extracted from electronic medical records and compared between survivors and non-survivors. We used univariable and multivariable logistic regression methods to explore the risk factors associated with in-hospital death. Findings 191 patients (135 from Jinyintan Hospital and 56 from Wuhan Pulmonary Hospital) were included in this study, of whom 137 were discharged and 54 died in hospital. 91 (48%) patients had a comorbidity, with hypertension being the most common (58 [30%] patients), followed by diabetes (36 [19%] patients) and coronary heart disease (15 [8%] patients). Multivariable regression showed increasing odds of in-hospital death associated with older age (odds ratio 1·10, 95% CI 1·03–1·17, per year increase; p=0·0043), higher Sequential Organ Failure Assessment (SOFA) score (5·65, 2·61–12·23; p<0·0001), and d-dimer greater than 1 μg/mL (18·42, 2·64–128·55; p=0·0033) on admission. Median duration of viral shedding was 20·0 days (IQR 17·0–24·0) in survivors, but SARS-CoV-2 was detectable until death in non-survivors. The longest observed duration of viral shedding in survivors was 37 days. Interpretation The potential risk factors of older age, high SOFA score, and d-dimer greater than 1 μg/mL could help clinicians to identify patients with poor prognosis at an early stage. Prolonged viral shedding provides the rationale for a strategy of isolation of infected patients and optimal antiviral interventions in the future. Funding Chinese Academy of Medical Sciences Innovation Fund for Medical Sciences; National Science Grant for Distinguished Young Scholars; National Key Research and Development Program of China; The Beijing Science and Technology Project; and Major Projects of National Science and Technology on New Drug Creation and Development.
Summary The recent emergence of the novel, pathogenic SARS-coronavirus 2 (SARS-CoV-2) in China and its rapid national and international spread pose a global health emergency. Cell entry of coronaviruses depends on binding of the viral spike (S) proteins to cellular receptors and on S protein priming by host cell proteases. Unravelling which cellular factors are used by SARS-CoV-2 for entry might provide insights into viral transmission and reveal therapeutic targets. Here, we demonstrate that SARS-CoV-2 uses the SARS-CoV receptor ACE2 for entry and the serine protease TMPRSS2 for S protein priming. A TMPRSS2 inhibitor approved for clinical use blocked entry and might constitute a treatment option. Finally, we show that the sera from convalescent SARS patients cross-neutralized SARS-2-S-driven entry. Our results reveal important commonalities between SARS-CoV-2 and SARS-CoV infection and identify a potential target for antiviral intervention.
Dear Editor, In December 2019, a novel pneumonia caused by a previously unknown pathogen emerged in Wuhan, a city of 11 million people in central China. The initial cases were linked to exposures in a seafood market in Wuhan. 1 As of January 27, 2020, the Chinese authorities reported 2835 confirmed cases in mainland China, including 81 deaths. Additionally, 19 confirmed cases were identified in Hong Kong, Macao and Taiwan, and 39 imported cases were identified in Thailand, Japan, South Korea, United States, Vietnam, Singapore, Nepal, France, Australia and Canada. The pathogen was soon identified as a novel coronavirus (2019-nCoV), which is closely related to sever acute respiratory syndrome CoV (SARS-CoV). 2 Currently, there is no specific treatment against the new virus. Therefore, identifying effective antiviral agents to combat the disease is urgently needed. An efficient approach to drug discovery is to test whether the existing antiviral drugs are effective in treating related viral infections. The 2019-nCoV belongs to Betacoronavirus which also contains SARS-CoV and Middle East respiratory syndrome CoV (MERS-CoV). Several drugs, such as ribavirin, interferon, lopinavir-ritonavir, corticosteroids, have been used in patients with SARS or MERS, although the efficacy of some drugs remains controversial. 3 In this study, we evaluated the antiviral efficiency of five FAD-approved drugs including ribavirin, penciclovir, nitazoxanide, nafamostat, chloroquine and two well-known broad-spectrum antiviral drugs remdesivir (GS-5734) and favipiravir (T-705) against a clinical isolate of 2019-nCoV in vitro. Standard assays were carried out to measure the effects of these compounds on the cytotoxicity, virus yield and infection rates of 2019-nCoVs. Firstly, the cytotoxicity of the candidate compounds in Vero E6 cells (ATCC-1586) was determined by the CCK8 assay. Then, Vero E6 cells were infected with nCoV-2019BetaCoV/Wuhan/WIV04/2019 2 at a multiplicity of infection (MOI) of 0.05 in the presence of varying concentrations of the test drugs. DMSO was used in the controls. Efficacies were evaluated by quantification of viral copy numbers in the cell supernatant via quantitative real-time RT-PCR (qRT-PCR) and confirmed with visualization of virus nucleoprotein (NP) expression through immunofluorescence microscopy at 48 h post infection (p.i.) (cytopathic effect was not obvious at this time point of infection). Among the seven tested drugs, high concentrations of three nucleoside analogs including ribavirin (half-maximal effective concentration (EC50) = 109.50 μM, half-cytotoxic concentration (CC50) > 400 μM, selectivity index (SI) > 3.65), penciclovir (EC50 = 95.96 μM, CC50 > 400 μM, SI > 4.17) and favipiravir (EC50 = 61.88 μM, CC50 > 400 μM, SI > 6.46) were required to reduce the viral infection (Fig. 1a and Supplementary information, Fig. S1). However, favipiravir has been shown to be 100% effective in protecting mice against Ebola virus challenge, although its EC50 value in Vero E6 cells was as high as 67 μM, 4 suggesting further in vivo studies are recommended to evaluate this antiviral nucleoside. Nafamostat, a potent inhibitor of MERS-CoV, which prevents membrane fusion, was inhibitive against the 2019-nCoV infection (EC50 = 22.50 μM, CC50 > 100 μM, SI > 4.44). Nitazoxanide, a commercial antiprotozoal agent with an antiviral potential against a broad range of viruses including human and animal coronaviruses, inhibited the 2019-nCoV at a low-micromolar concentration (EC50 = 2.12 μM; CC50 > 35.53 μM; SI > 16.76). Further in vivo evaluation of this drug against 2019-nCoV infection is recommended. Notably, two compounds remdesivir (EC50 = 0.77 μM; CC50 > 100 μM; SI > 129.87) and chloroquine (EC50 = 1.13 μM; CC50 > 100 μM, SI > 88.50) potently blocked virus infection at low-micromolar concentration and showed high SI (Fig. 1a, b). Fig. 1 The antiviral activities of the test drugs against 2019-nCoV in vitro. a Vero E6 cells were infected with 2019-nCoV at an MOI of 0.05 in the treatment of different doses of the indicated antivirals for 48 h. The viral yield in the cell supernatant was then quantified by qRT-PCR. Cytotoxicity of these drugs to Vero E6 cells was measured by CCK-8 assays. The left and right Y-axis of the graphs represent mean % inhibition of virus yield and cytotoxicity of the drugs, respectively. The experiments were done in triplicates. b Immunofluorescence microscopy of virus infection upon treatment of remdesivir and chloroquine. Virus infection and drug treatment were performed as mentioned above. At 48 h p.i., the infected cells were fixed, and then probed with rabbit sera against the NP of a bat SARS-related CoV 2 as the primary antibody and Alexa 488-labeled goat anti-rabbit IgG (1:500; Abcam) as the secondary antibody, respectively. The nuclei were stained with Hoechst dye. Bars, 100 μm. c and d Time-of-addition experiment of remdesivir and chloroquine. For “Full-time” treatment, Vero E6 cells were pre-treated with the drugs for 1 h, and virus was then added to allow attachment for 2 h. Afterwards, the virus–drug mixture was removed, and the cells were cultured with drug-containing medium until the end of the experiment. For “Entry” treatment, the drugs were added to the cells for 1 h before viral attachment, and at 2 h p.i., the virus–drug mixture was replaced with fresh culture medium and maintained till the end of the experiment. For “Post-entry” experiment, drugs were added at 2 h p.i., and maintained until the end of the experiment. For all the experimental groups, cells were infected with 2019-nCoV at an MOI of 0.05, and virus yield in the infected cell supernatants was quantified by qRT-PCR c and NP expression in infected cells was analyzed by Western blot d at 14 h p.i. Remdesivir has been recently recognized as a promising antiviral drug against a wide array of RNA viruses (including SARS/MERS-CoV 5 ) infection in cultured cells, mice and nonhuman primate (NHP) models. It is currently under clinical development for the treatment of Ebola virus infection. 6 Remdesivir is an adenosine analogue, which incorporates into nascent viral RNA chains and results in pre-mature termination. 7 Our time-of-addition assay showed remdesivir functioned at a stage post virus entry (Fig. 1c, d), which is in agreement with its putative anti-viral mechanism as a nucleotide analogue. Warren et al. showed that in NHP model, intravenous administration of 10 mg/kg dose of remdesivir resulted in concomitant persistent levels of its active form in the blood (10 μM) and conferred 100% protection against Ebola virus infection. 7 Our data showed that EC90 value of remdesivir against 2019-nCoV in Vero E6 cells was 1.76 μM, suggesting its working concentration is likely to be achieved in NHP. Our preliminary data (Supplementary information, Fig. S2) showed that remdesivir also inhibited virus infection efficiently in a human cell line (human liver cancer Huh-7 cells), which is sensitive to 2019-nCoV. 2 Chloroquine, a widely-used anti-malarial and autoimmune disease drug, has recently been reported as a potential broad-spectrum antiviral drug. 8,9 Chloroquine is known to block virus infection by increasing endosomal pH required for virus/cell fusion, as well as interfering with the glycosylation of cellular receptors of SARS-CoV. 10 Our time-of-addition assay demonstrated that chloroquine functioned at both entry, and at post-entry stages of the 2019-nCoV infection in Vero E6 cells (Fig. 1c, d). Besides its antiviral activity, chloroquine has an immune-modulating activity, which may synergistically enhance its antiviral effect in vivo. Chloroquine is widely distributed in the whole body, including lung, after oral administration. The EC90 value of chloroquine against the 2019-nCoV in Vero E6 cells was 6.90 μM, which can be clinically achievable as demonstrated in the plasma of rheumatoid arthritis patients who received 500 mg administration. 11 Chloroquine is a cheap and a safe drug that has been used for more than 70 years and, therefore, it is potentially clinically applicable against the 2019-nCoV. Our findings reveal that remdesivir and chloroquine are highly effective in the control of 2019-nCoV infection in vitro. Since these compounds have been used in human patients with a safety track record and shown to be effective against various ailments, we suggest that they should be assessed in human patients suffering from the novel coronavirus disease. Supplementary information Supplementary information, Materials and Figures
[1]University of Zurich Centre for Travel Medicine, WHO Collaborating for Travellers'
Health, Department of Public and Global Health, Institute for Epidemiology, Biostatistics
and Prevention, Hirschengraben 84, 8001, Zurich, Switzerland
[2]Center of Tropical Medicine and Travel Medicine, Amsterdam University Medical Centers,
Location AMC, Amsterdam, the Netherlands
[3]University of Zurich Centre for Travel Medicine, WHO Collaborating for Travellers'
Health, Department of Public and Global Health, Institute for Epidemiology, Biostatistics
and Prevention, Hirschengraben 84, 8001, Zurich, Switzerland
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