Moises Exposito-Alonso:
ORCID: http://orcid.org/0000-0001-5711-0700
Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole:
MethodologyRole: ValidationRole: VisualizationRole: Writing – original draftRole:
Writing – review & editing
Claude Becker:
ORCID: http://orcid.org/0000-0003-3406-4670
Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole:
MethodologyRole: ValidationRole: VisualizationRole: Writing – review & editing
Verena J. Schuenemann: Role: InvestigationRole: Methodology
Ella Reiter: Role: InvestigationRole: Methodology
Claudia Setzer: Role: InvestigationRole: Methodology
Radka Slovak: Role: InvestigationRole: Methodology
Benjamin Brachi: Role: InvestigationRole: Methodology
Jörg Hagmann: Role: Formal analysisRole: InvestigationRole: Methodology
Dominik G. Grimm: Role: Formal analysisRole: InvestigationRole: Methodology
Jiahui Chen: Role: InvestigationRole: Methodology
Wolfgang Busch:
ORCID: http://orcid.org/0000-0003-2042-7290
Role: Funding acquisitionRole: Supervision
Joy Bergelson:
ORCID: http://orcid.org/0000-0001-7893-7387
Role: ConceptualizationRole: Funding acquisitionRole: SupervisionRole: Writing – review
& editing
Rob W. Ness: Role: Formal analysisRole: InvestigationRole: MethodologyRole: SupervisionRole: Writing
– review & editing
Johannes Krause:
ORCID: http://orcid.org/0000-0001-9144-3920
Role: ConceptualizationRole: Funding acquisitionRole: SupervisionRole: Writing – review
& editing
Hernán A. Burbano:
ORCID: http://orcid.org/0000-0003-3433-719X
Role: ConceptualizationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole:
MethodologyRole: SupervisionRole: Writing – review & editing
Detlef Weigel:
ORCID: http://orcid.org/0000-0002-2114-7963
Role: ConceptualizationRole: Funding acquisitionRole: SupervisionRole: Writing – review
& editing
Jeffrey Ross-Ibarra: Role: Editor
Journal ID (nlm-ta): PLoS Genet
Journal ID (iso-abbrev): PLoS Genet
Journal ID (publisher-id): plos
Journal ID (pmc): plosgen
Title:
PLoS Genetics
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1553-7390
ISSN
(Electronic):
1553-7404
Publication date
(Electronic):
12
February
2018
Publication date Collection:
February
2018
Volume: 14
Issue: 2
Electronic Location Identifier: e1007155
Affiliations
[1
]
Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen,
Germany
[2
]
Research Group for Ancient Genomics and Evolution, Max Planck Institute for Developmental
Biology, Tübingen, Germany
[3
]
Institute of Archaeological Sciences, University of Tübingen, Tübingen, Germany
[4
]
Senckenberg Center for Human Evolution and Paleoenvironment, University of Tübingen,
Tübingen, Germany
[5
]
Gregor Mendel Institute, Austrian Academy of Sciences, Vienna, Austria
[6
]
Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, United
States of America
[7
]
Institute of Tibet Plateau Research, Chinese Academy of Sciences, Beijing, China
[8
]
Department of Biology, University of Toronto Mississauga, Mississauga, Ontario, Canada
[9
]
Department of Archeogenetics, Max Planck Institute for the Science of Human History,
Jena, Germany
University of California Davis, UNITED STATES
Author notes
The authors have declared that no competing interests exist.
[¤a]
Current address: INRA, UMR 1202 Biodiversité Gènes & Communautés, Cestas, Bordeaux,
France
[¤b]
Current address: Computomics, Tübingen, Germany
[¤c]
Current address: Department of Biosystems Science and Engineering, ETH Zurich, Basel,
Switzerland
[¤d]
Current address: Salk Institute for Biological Studies, La Jolla, California, United
States of America
‡ MEA and CB share co-first authorship of this work.
Author information
Article
Publisher ID:
PGENETICS-D-17-01896
DOI: 10.1371/journal.pgen.1007155
PMC ID: 5825158
PubMed ID: 29432421
SO-VID: 4c2f9796-921a-4ab2-b99d-5aec5ffc01bd
Copyright © © 2018 Exposito-Alonso et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by: Max-Planck-Gesellschaft (DE)
Award Recipient
:
ORCID: http://orcid.org/0000-0003-3433-719X
Hernán A. Burbano
Funded by: funder-id http://dx.doi.org/10.13039/501100004189, Max-Planck-Gesellschaft;
Award Recipient
:
ORCID: http://orcid.org/0000-0001-9144-3920
Johannes Krause
Funded by: funder-id http://dx.doi.org/10.13039/501100004189, Max-Planck-Gesellschaft;
Award Recipient
:
ORCID: http://orcid.org/0000-0002-2114-7963
Detlef Weigel
Funded by: funder-id http://dx.doi.org/10.13039/501100000781, European Research Council;
Award Recipient
:
ORCID: http://orcid.org/0000-0002-2114-7963
Detlef Weigel
This study was supported by the President’s Fund of the Max Planck Society (project
“Darwin”) to HAB and by an ERC grant (AdG IMMUNEMESIS) and core funds of the Max Planck
Society to DW. The funders had no role in study design, data collection and analysis,
decision to publish, or preparation of the manuscript.
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Computer and Information Sciences
Subject:
Data Management
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Research and Analysis Methods
Subject:
Experimental Organism Systems
Subject:
Model Organisms
Subject:
Arabidopsis Thaliana
Subject:
Research and Analysis Methods
Subject:
Model Organisms
Subject:
Arabidopsis Thaliana
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Eukaryota
Subject:
Plants
Subject:
Brassica
Subject:
Arabidopsis Thaliana
Subject:
Research and Analysis Methods
Subject:
Experimental Organism Systems
Subject:
Plant and Algal Models
Subject:
Arabidopsis Thaliana
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Mutation
Subject:
Substitution Mutation
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Plant Genomics
Subject:
Biology and Life Sciences
Subject:
Biotechnology
Subject:
Plant Biotechnology
Subject:
Plant Genomics
Subject:
Biology and Life Sciences
Subject:
Plant Science
Subject:
Plant Biotechnology
Subject:
Plant Genomics
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Plant Genetics
Subject:
Plant Genomics
Subject:
Biology and Life Sciences
Subject:
Plant Science
Subject:
Plant Genetics
Subject:
Plant Genomics
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Genome Annotation
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
Subject:
Genome Annotation
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Population Genetics
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Population Genetics
Subject:
Biology and Life Sciences
Subject:
Population Biology
Subject:
Population Genetics
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Genomic Libraries
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
Subject:
Genomic Libraries
Subject:
Physical Sciences
Subject:
Chemistry
Subject:
Chemical Reactions
Subject:
Methylation