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      Hoya pyrifolia (Apocynaceae), a new species from south-western Yunnan, China

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          Abstract

          Hoya pyrifolia , a new species of Apocynaceae from Yunnan Province, China, is described and illustrated. Results from phylogenetic analyses, based on combined DNA fragments of the nuclear ribosomal external transcribed spacer (ETS), intergeneric transcribed spacer (ITS) and three plastid DNA fragments ( matK, psbA-trnH and trnT-trnL), showed that the new species was nested within a clade, including Hoya species distributed in the subtropical foothills of the Himalayas and the Tibet-Sichuan Plateau. Morphologically, the new species can be distinguished from its close relatives by its pyriform and slightly pubescent leaves, as well as the 4-flowered inflorescences.

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          MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

          We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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            jModelTest: phylogenetic model averaging.

            jModelTest is a new program for the statistical selection of models of nucleotide substitution based on "Phyml" (Guindon and Gascuel 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.). It implements 5 different selection strategies, including "hierarchical and dynamical likelihood ratio tests," the "Akaike information criterion," the "Bayesian information criterion," and a "decision-theoretic performance-based" approach. This program also calculates the relative importance and model-averaged estimates of substitution parameters, including a model-averaged estimate of the phylogeny. jModelTest is written in Java and runs under Mac OSX, Windows, and Unix systems with a Java Runtime Environment installed. The program, including documentation, can be freely downloaded from the software section at http://darwin.uvigo.es.
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              Wax plants (Hoya, Apocynaceae) evolution: Epiphytism drives successful radiation

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                Author and article information

                Contributors
                Journal
                PhytoKeys
                PhytoKeys
                3
                urn:lsid:arphahub.com:pub:F7FCE910-8E78-573F-9C77-7788555F8AAD
                PhytoKeys
                Pensoft Publishers
                1314-2011
                1314-2003
                2021
                02 February 2021
                : 174
                : 95-106
                Affiliations
                [1 ] Guangxi Nanning Roy Garden Co. Ltd., Nanning 530227, Guangxi, China Guangxi Nanning Roy Garden Co. Ltd. Nanning China
                [2 ] College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China South China Agricultural University Guangzhou China
                [3 ] State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China Institute of Botany, Chinese Academy of Sciences Beijing China
                [4 ] University of Chinese Academy of Sciences, Beijing 10049, China University of Chinese Academy of Sciences Beijing China
                [5 ] Shenzhen Key Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences, Shenzhen 518004, Guangdong, China Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences Shenzhen China
                [6 ] Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China Kunming Institute of Botany, Chinese Academy of Sciences Kunming China
                [7 ] State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China Chinese Academy of Forestry Beijing China
                Author notes
                Corresponding author: Xian-Chun Zhang ( zhangxc@ 123456ibcas.ac.cn )

                Academic editor: P. De Block

                Author information
                https://orcid.org/0000-0003-3101-8230
                Article
                60137
                10.3897/phytokeys.174.60137
                7979681
                33776525
                4b87673f-1814-4d02-a86c-1dddda8df99c
                Er-Feng Huang, Gang Yao, Ri-Hong Jiang, Lei-Lei Yang, Xi Wang, Zhong-Shuai Zhang, Xian-Chun Zhang

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 29 October 2020
                : 21 January 2021
                Funding
                The National Science Foundation of China
                Categories
                Research Article
                Apocynaceae
                Taxonomy
                Cenozoic
                Asia

                Plant science & Botany
                apocynaceae , asclepiodoideae ,china, hoya ,taxonomy
                Plant science & Botany
                apocynaceae , asclepiodoideae , china, hoya , taxonomy

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