Contributors
Edward M. Culbertson: Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
Project administrationRole: ValidationRole: VisualizationRole: Writing – original
draftRole: Writing – review & editing
Tera C. Levin:
ORCID: https://orcid.org/0000-0001-7883-8522
Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: Project administrationRole:
SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole:
Writing – review & editing
Michael T. Laub: Role: Academic Editor
Journal
Journal ID (nlm-ta): PLoS Biol
Journal ID (iso-abbrev): PLoS Biol
Journal ID (publisher-id): plos
Title:
PLOS Biology
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1544-9173
ISSN
(Electronic):
1545-7885
Publication date
(Electronic):
8
December
2023
Publication date Collection:
December
2023
Publication date PMC-release: 8
December
2023
Volume: 21
Issue: 12
Electronic Location Identifier: e3002436
Affiliations
[001]
University of Pittsburgh, Department of Biological Sciences, Pittsburgh, Pennsylvania,
United States of America
HHMI, Massachusetts Institute of Technology, UNITED STATES
Author notes
The authors have declared that no competing interests exist.
Author information
Article
Publisher ID:
PBIOLOGY-D-23-02924
DOI: 10.1371/journal.pbio.3002436
PMC ID: 10732462
PubMed ID: 38064485
SO-VID: 4b159e39-8fba-423d-a80b-1e85159b4658
Copyright © © 2023 Culbertson, Levin
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
History
Date
received
: 7
November
2023
Date
accepted
: 20
November
2023
Page count
Figures: 5,
Tables: 0,
Pages: 26
Funding
Funded by:
University of Pittsburgh Center for Research Computing
Award ID: RRID:SCR_022735
Funded by:
funder-id http://dx.doi.org/10.13039/100016958, Office of Research Infrastructure Programs, National Institutes of Health;
Award ID: S10OD028483
Funded by:
Directorate for Biological Sciences, National Science Foundation
Award ID: 2208971
Award Recipient
:
Edward M. Culbertson
Funded by:
funder-id http://dx.doi.org/10.13039/100006492, Division of Intramural Research, National Institute of Allergy and Infectious Diseases;
Award ID: R00AI139344
Award Recipient
:
ORCID: https://orcid.org/0000-0001-7883-8522
Tera C. Levin
Funded by:
funder-id http://dx.doi.org/10.13039/100000057, National Institute of General Medical Sciences;
Award ID: R35GM150681
Award Recipient
:
ORCID: https://orcid.org/0000-0001-7883-8522
Tera C. Levin
This research was supported in part by the University of Pittsburgh Center for Research
Computing, RRID:SCR_022735, through the resources provided. Specifically, this work
used the HTC cluster, which is supported by NIH award number S10OD028483. EMC was
supported by NSF Postdoctoral fellowship 2208971 and TCL was supported by NIH R00AI139344
and R35GM150681. The funders had no role in study design, data collection and analysis,
decision to publish, or preparation of the manuscript.
Categories
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Eukaryota
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Computer and Information Sciences
Subject:
Data Management
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Biochemistry
Subject:
Proteins
Subject:
Protein Domains
Subject:
Physical sciences
Subject:
Mathematics
Subject:
Probability theory
Subject:
Markov models
Subject:
Hidden Markov models
Subject:
Research and Analysis Methods
Subject:
Database and Informatics Methods
Subject:
Bioinformatics
Subject:
Sequence Analysis
Subject:
Sequence Alignment
Subject:
Biology and Life Sciences
Subject:
Immunology
Subject:
Immune System Proteins
Subject:
Medicine and Health Sciences
Subject:
Immunology
Subject:
Immune System Proteins
Subject:
Biology and Life Sciences
Subject:
Biochemistry
Subject:
Proteins
Subject:
Immune System Proteins
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Processes
Subject:
Horizontal Gene Transfer
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Gene Transfer
Subject:
Horizontal Gene Transfer
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Immunology
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