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      Consensus of experts from the Spanish Pharmacogenetics and Pharmacogenomics Society and the Spanish Society of Medical Oncology for the genotyping of DPYD in cancer patients who are candidates for treatment with fluoropyrimidines

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          Abstract

          5-Fluorouracil (5-FU) and oral fluoropyrimidines, such as capecitabine, are widely used in the treatment of cancer, especially gastrointestinal tumors and breast cancer, but their administration can produce serious and even lethal toxicity. This toxicity is often related to the partial or complete deficiency of the dihydropyrimidine dehydrogenase (DPD) enzyme, which causes a reduction in clearance and a longer half-life of 5-FU. It is advisable to determine if a DPD deficiency exists before administering these drugs by genotyping DPYD gene polymorphisms. The objective of this consensus of experts, in which representatives from the Spanish Pharmacogenetics and Pharmacogenomics Society and the Spanish Society of Medical Oncology participated, is to establish clear recommendations for the implementation of genotype and/or phenotype testing for DPD deficiency in patients who are candidates to receive fluoropyrimidines. The genotyping of DPYD previous to treatment classifies individuals as normal, intermediate, or poor metabolizers. Normal metabolizers do not require changes in the initial dose, intermediate metabolizers should start treatment with fluoropyrimidines at doses reduced to 50%, and poor metabolizers are contraindicated for fluoropyrimidines.

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          A global reference for human genetic variation

          The 1000 Genomes Project set out to provide a comprehensive description of common human genetic variation by applying whole-genome sequencing to a diverse set of individuals from multiple populations. Here we report completion of the project, having reconstructed the genomes of 2,504 individuals from 26 populations using a combination of low-coverage whole-genome sequencing, deep exome sequencing, and dense microarray genotyping. We characterized a broad spectrum of genetic variation, in total over 88 million variants (84.7 million single nucleotide polymorphisms (SNPs), 3.6 million short insertions/deletions (indels), and 60,000 structural variants), all phased onto high-quality haplotypes. This resource includes >99% of SNP variants with a frequency of >1% for a variety of ancestries. We describe the distribution of genetic variation across the global sample, and discuss the implications for common disease studies.
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            Prediction of Creatinine Clearance from Serum Creatinine

            A formula has been developed to predict creatinine clearance (C cr ) from serum creatinine (S cr ) in adult males: Ccr = (140 – age) (wt kg)/72 × S cr (mg/100ml) (15% less in females). Derivation included the relationship found between age and 24-hour creatinine excretion/kg in 249 patients aged 18–92. Values for C cr were predicted by this formula and four other methods and the results compared with the means of two 24-hour C cr’s measured in 236 patients. The above formula gave a correlation coefficient between predicted and mean measured Ccr·s of 0.83; on average, the difference between predicted and mean measured values was no greater than that between paired clearances. Factors for age and body weight must be included for reasonable prediction.
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              ClinVar: improving access to variant interpretations and supporting evidence

              Abstract ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, public archive of human genetic variants and interpretations of their significance to disease, maintained at the National Institutes of Health. Interpretations of the clinical significance of variants are submitted by clinical testing laboratories, research laboratories, expert panels and other groups. ClinVar aggregates data by variant-disease pairs, and by variant (or set of variants). Data aggregated by variant are accessible on the website, in an improved set of variant call format files and as a new comprehensive XML report. ClinVar recently started accepting submissions that are focused primarily on providing phenotypic information for individuals who have had genetic testing. Submissions may come from clinical providers providing their own interpretation of the variant (‘provider interpretation’) or from groups such as patient registries that primarily provide phenotypic information from patients (‘phenotyping only’). ClinVar continues to make improvements to its search and retrieval functions. Several new fields are now indexed for more precise searching, and filters allow the user to narrow down a large set of search results.
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                Author and article information

                Contributors
                pgarcaalfonso@gmail.com
                msaiz@hubu.es
                rmondejars@hotmail.com
                jsalazar@santpau.cat
                dpaez@santpau.cat
                alberto.borobia@salud.madrid.org
                mjsafont@yahoo.es
                irene.ucicec@gmail.com
                rcolomer@seom.org
                xandra.garcia@salud.madrid.org
                maria.jose.herrero@uv.es
                llfernandez@salud.madrid.org
                francisco.abad@salud.madrid.org
                Journal
                Clin Transl Oncol
                Clin Transl Oncol
                Clinical & Translational Oncology
                Springer International Publishing (Cham )
                1699-048X
                1699-3055
                13 November 2021
                13 November 2021
                2022
                : 24
                : 3
                : 483-494
                Affiliations
                [1 ]GRID grid.410526.4, ISNI 0000 0001 0277 7938, Medical Oncology Department, , Hospital General Universitario Gregorio Marañón, Sociedad Española de Oncología Médica (SEOM), ; C/Doctor Esquerdo, 46, 28007 Madrid, Spain
                [2 ]GRID grid.459669.1, ISNI 0000 0004 1771 1036, Research Unit, Fundación Burgos por la Investigación de la Salud (FBIS), , Hospital Universitario de Burgos, Sociedad Española de Farmacogenética y Farmacogenómica (SEFF), ; Burgos, Spain
                [3 ]GRID grid.411251.2, ISNI 0000 0004 1767 647X, Medical Oncology Service, , Hospital Universitario de la Princesa, Sociedad Española de Oncología Médica (SEOM), ; Madrid, Spain
                [4 ]GRID grid.413396.a, ISNI 0000 0004 1768 8905, Research Institute of Hospital de la Santa Creu I Sant Pau, Sociedad Española de Farmacogenética y Farmacogenómica (SEFF), ; Barcelona, Spain
                [5 ]GRID grid.413396.a, ISNI 0000 0004 1768 8905, Medical Oncology Department, , Hospital de la Santa Creu I Sant Pau, Sociedad Española de Oncología Médica (SEOM), ; Barcelona, España
                [6 ]GRID grid.81821.32, ISNI 0000 0000 8970 9163, Clinical Pharmacology Service, , Hospital Universitario La Paz, Sociedad Española de Farmacogenética y Farmacogenómica (SEFF), ; Madrid, Spain
                [7 ]Medical Oncology Service, Consorcio Hospital General Universitario de Valencia, Universidad de Valencia, CIBERONC, Sociedad Española de Oncología Médica (SEOM), Valencia, Spain
                [8 ]GRID grid.5515.4, ISNI 0000000119578126, Medical Oncology Service, , Hospital Universitario de La Princesa y Cátedra de Medicina Personalizada de Precisión de la Universidad Autónoma de Madrid (UAM), Sociedad Española de Oncología Médica (SEOM), ; Madrid, Spain
                [9 ]GRID grid.410526.4, ISNI 0000 0001 0277 7938, Hospital Pharmacy Service, , Hospital General Universitario Gregorio Marañón, Sociedad Española de Farmacogenética y Farmacogenómica (SEFF), ; Madrid, Spain
                [10 ]GRID grid.5338.d, ISNI 0000 0001 2173 938X, Pharmacogenetics Platform, IIS La Fe-Hospital La Fe and Pharmacology Department, , Universidad de Valencia, Sociedad Española de Farmacogenética y Farmacogenómica (SEFF), ; Valencia, Spain
                [11 ]GRID grid.411251.2, ISNI 0000 0004 1767 647X, Clinical Pharmacology Service, , Hospital Universitario de La Princesa, Universidad Autónoma de Madrid, Sociedad Española de Farmacogenética y Farmacogenómica (SEFF), ; C/Diego de León, 62., 28006 Madrid, Spain
                Author information
                http://orcid.org/0000-0002-4373-9978
                http://orcid.org/0000-0002-1660-3135
                http://orcid.org/0000-0002-8584-3263
                http://orcid.org/0000-0002-6519-8885
                Article
                2708
                10.1007/s12094-021-02708-4
                8885558
                34773566
                4956b926-78d0-43b2-a5d5-ef461df27166
                © The Author(s) 2021

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 27 July 2021
                : 11 September 2021
                Categories
                Special Article
                Custom metadata
                © The Author(s), under exclusive licence to Federación de Sociedades Españolas de Oncología (FESEO) 2022

                Oncology & Radiotherapy
                5-fluorouracil,capecitabine,dihydropyrimidine dehydrogenase,genotypes,pharmacogenetics,toxicity

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