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      MaHsf24, a novel negative modulator, regulates cold tolerance in banana fruits by repressing the expression of HSPs and antioxidant enzyme genes

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          Summary

          Transcriptional regulation mechanisms underlying chilling injury (CI) development have been widely investigated in model plants and cold‐sensitive fruits, such as banana ( Musa acuminata). However, unlike the well‐known NAC and WRKY transcription factors (TFs), the function and deciphering mechanism of heat shock factors (HSFs) involving in cold response are still fragmented. Here, we showed that hot water treatment (HWT) alleviated CI in harvested banana fruits accomplishing with reduced reactive oxygen species (ROS) accumulation and increased antioxidant enzyme activities. A cold‐inducible but HWT‐inhibited HSF, MaHsf24, was identified. Using DNA affinity purification sequencing (DAP‐seq) combined with RNA‐seq analyses, we found three heat shock protein (HSP) genes ( MaHSP23.6, MaHSP70‐1.1 and MaHSP70‐1.2) and three antioxidant enzyme genes ( MaAPX1, MaMDAR4 and MaGSTZ1) were the potential targets of MaHsf24. Subsequent electrophoretic mobility shift assay (EMSA), chromatin immunoprecipitation coupled with quantitative PCR (ChIP‐qPCR) and dual‐luciferase reporter (DLR) analyses demonstrated that MaHsf24 repressed the transcription of these six targets via directly binding to their promoters. Moreover, stably overexpressing MaHsf24 in tomatoes increased cold sensitivity by suppressing the expressions of HSPs and antioxidant enzyme genes, while HWT could recover cold tolerance, maintaining higher levels of HSPs and antioxidant enzyme genes, and activities of antioxidant enzymes. In contrast, transiently silencing MaHsf24 by virus‐induced gene silencing (VIGS) in banana peels conferred cold resistance with the upregulation of MaHSPs and antioxidant enzyme genes. Collectively, our findings support the negative role of MaHsf24 in cold tolerance, and unravel a novel regulatory network controlling bananas CI occurrence, concerning MaHsf24‐exerted inhibition of MaHSPs and antioxidant enzyme genes.

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          Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

          The two most commonly used methods to analyze data from real-time, quantitative PCR experiments are absolute quantification and relative quantification. Absolute quantification determines the input copy number, usually by relating the PCR signal to a standard curve. Relative quantification relates the PCR signal of the target transcript in a treatment group to that of another sample such as an untreated control. The 2(-Delta Delta C(T)) method is a convenient way to analyze the relative changes in gene expression from real-time quantitative PCR experiments. The purpose of this report is to present the derivation, assumptions, and applications of the 2(-Delta Delta C(T)) method. In addition, we present the derivation and applications of two variations of the 2(-Delta Delta C(T)) method that may be useful in the analysis of real-time, quantitative PCR data. Copyright 2001 Elsevier Science (USA).
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            PUVA-induced repigmentation of vitiligo: scanning electron microscopy of hair follicles.

            PUVA-i-duced repigmentation of vitiligo was studied using both the split-dopa reaction and scanning electron microscopy. Proliferation of hypertrophic, Dopa-positive melanocytes were observed in the lower portion of some hair follicles, whereas other giant melanocytes were observed along the middle portion. The existence of a melanocyte reservoir in human hair follicles is postulated.
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              Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape.

              The cistrome is the complete set of transcription factor (TF) binding sites (cis-elements) in an organism, while an epicistrome incorporates tissue-specific DNA chemical modifications and TF-specific chemical sensitivities into these binding profiles. Robust methods to construct comprehensive cistrome and epicistrome maps are critical for elucidating complex transcriptional networks that underlie growth, behavior, and disease. Here, we describe DNA affinity purification sequencing (DAP-seq), a high-throughput TF binding site discovery method that interrogates genomic DNA with in-vitro-expressed TFs. Using DAP-seq, we defined the Arabidopsis cistrome by resolving motifs and peaks for 529 TFs. Because genomic DNA used in DAP-seq retains 5-methylcytosines, we determined that >75% (248/327) of Arabidopsis TFs surveyed were methylation sensitive, a property that strongly impacts the epicistrome landscape. DAP-seq datasets also yielded insight into the biology and binding site architecture of numerous TFs, demonstrating the value of DAP-seq for cost-effective cistromic and epicistromic annotation in any organism.
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                Author and article information

                Contributors
                weiwei@scau.edu.cn
                chenjianye@scau.edu.cn
                Journal
                Plant Biotechnol J
                Plant Biotechnol J
                10.1111/(ISSN)1467-7652
                PBI
                Plant Biotechnology Journal
                John Wiley and Sons Inc. (Hoboken )
                1467-7644
                1467-7652
                10 June 2024
                October 2024
                : 22
                : 10 ( doiID: 10.1111/pbi.v22.10 )
                : 2873-2886
                Affiliations
                [ 1 ] State Key Laboratory for Conservation and Utilization of Subtropical Agro‐bioresources/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables/Engineering Research Center of Southern Horticultural Products Preservation, Ministry of Education, College of Horticulture South China Agricultural University Guangzhou China
                [ 2 ] Key Laboratory of Postharvest Biology of Subtropical Special Agricultural/Institute of Postharvest Technology of Agricultural Products, College of Food Science Fujian Agriculture and Forestry University Fuzhou China
                Author notes
                [*] [* ] Correspondence (Tel 862085280228; fax 862085280228; email chenjianye@ 123456scau.edu.cn (J.‐y.C.); email weiwei@ 123456scau.edu.cn (W.W.)).

                [ † ]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0001-9192-2155
                https://orcid.org/0000-0002-2373-7422
                https://orcid.org/0000-0002-8975-6941
                Article
                PBI14410 PBI-00135-2024.R1
                10.1111/pbi.14410
                11536452
                38856080
                490b8109-74b3-4145-b789-d14e3a34e397
                © 2024 The Author(s). Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.

                History
                : 29 April 2024
                : 27 January 2024
                : 27 May 2024
                Page count
                Figures: 7, Tables: 0, Pages: 14, Words: 11549
                Funding
                Funded by: China Agriculture Research System of MOF and MARA
                Award ID: CARS‐31
                Funded by: National Natural Science Foundation of China , doi 10.13039/501100001809;
                Award ID: 32202124
                Award ID: 32372776
                Funded by: National Key Research and Development Program of China , doi 10.13039/501100012166;
                Award ID: 2022YFD2100103
                Categories
                Research Article
                Research Article
                Custom metadata
                2.0
                October 2024
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.5.0 mode:remove_FC converted:04.11.2024

                Biotechnology
                banana fruits,cold tolerance,hsf,antioxidant enzyme genes,transcriptional regulation
                Biotechnology
                banana fruits, cold tolerance, hsf, antioxidant enzyme genes, transcriptional regulation

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