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      HLH‐30‐dependent rewiring of metabolism during starvation in C. elegans

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          Abstract

          One of the most fundamental challenges for all living organisms is to sense and respond to alternating nutritional conditions in order to adapt their metabolism and physiology to promote survival and achieve balanced growth. Here, we applied metabolomics and lipidomics to examine temporal regulation of metabolism during starvation in wild‐type Caenorhabditis elegans and in animals lacking the transcription factor HLH‐30. Our findings show for the first time that starvation alters the abundance of hundreds of metabolites and lipid species in a temporal‐ and HLH‐30‐dependent manner. We demonstrate that premature death of hlh30 animals under starvation can be prevented by supplementation of exogenous fatty acids, and that HLH‐30 is required for complete oxidation of long‐chain fatty acids. We further show that RNAi‐mediated knockdown of the gene encoding carnitine palmitoyl transferase I ( cpt1) only impairs survival of wild‐type animals and not of hlh30 animals. Strikingly, we also find that compromised generation of peroxisomes by prx5 knockdown renders hlh30 animals hypersensitive to starvation, which cannot be rescued by supplementation of exogenous fatty acids. Collectively, our observations show that mitochondrial functions are compromised in hlh30 animals and that hlh30 animals rewire their metabolism to largely depend on functional peroxisomes during starvation, underlining the importance of metabolic plasticity to maintain survival.

          Abstract

          We have applied a combinatorial metabolomics and lipidomics approach to examine temporal regulation of metabolism during starvation and how HLH‐30 regulates metabolism during starvation in C. elegans. We find that starvation increases the abundance of cardiolipins and acyl‐carnitines and enhances fatty acid oxidation in an HLH‐30‐dependent manner. Loss of HLH‐30 renders C. elegans strictly dependent of peroxisomal biogenesis during starvation to maintain survival. Our findings underlines the importance of metabolic plasticity to respond and adapt to varying nutritional conditions.

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          A SIMPLE METHOD FOR THE ISOLATION AND PURIFICATION OF TOTAL LIPIDES FROM ANIMAL TISSUES

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            A rapid method of total lipid extraction and purification.

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              HMDB 4.0: the human metabolome database for 2018

              Abstract The Human Metabolome Database or HMDB (www.hmdb.ca) is a web-enabled metabolomic database containing comprehensive information about human metabolites along with their biological roles, physiological concentrations, disease associations, chemical reactions, metabolic pathways, and reference spectra. First described in 2007, the HMDB is now considered the standard metabolomic resource for human metabolic studies. Over the past decade the HMDB has continued to grow and evolve in response to emerging needs for metabolomics researchers and continuing changes in web standards. This year's update, HMDB 4.0, represents the most significant upgrade to the database in its history. For instance, the number of fully annotated metabolites has increased by nearly threefold, the number of experimental spectra has grown by almost fourfold and the number of illustrated metabolic pathways has grown by a factor of almost 60. Significant improvements have also been made to the HMDB’s chemical taxonomy, chemical ontology, spectral viewing, and spectral/text searching tools. A great deal of brand new data has also been added to HMDB 4.0. This includes large quantities of predicted MS/MS and GC–MS reference spectral data as well as predicted (physiologically feasible) metabolite structures to facilitate novel metabolite identification. Additional information on metabolite-SNP interactions and the influence of drugs on metabolite levels (pharmacometabolomics) has also been added. Many other important improvements in the content, the interface, and the performance of the HMDB website have been made and these should greatly enhance its ease of use and its potential applications in nutrition, biochemistry, clinical chemistry, clinical genetics, medicine, and metabolomics science.
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                Author and article information

                Contributors
                nils.f@bmb.sdu.dk
                Journal
                Aging Cell
                Aging Cell
                10.1111/(ISSN)1474-9726
                ACEL
                Aging Cell
                John Wiley and Sons Inc. (Hoboken )
                1474-9718
                1474-9726
                16 March 2021
                April 2021
                : 20
                : 4 ( doiID: 10.1111/acel.v20.4 )
                : e13342
                Affiliations
                [ 1 ] Department of Biochemistry and Molecular Biology Villum Center for Bioanalytical Sciences University of Southern Denmark Odense M Denmark
                [ 2 ] Research Unit Analytical BioGeoChemistry Helmholtz Zentrum München Neuherberg Germany
                [ 3 ] Metabolomics and Proteomics Core Helmholtz Zentrum München Neuherberg Germany
                [ 4 ] Chair of Analytical Food Chemistry Technische Universität München Freising Germany
                Author notes
                [*] [* ] Correspondence

                Nils J. Færgeman, Department of Biochemistry and Molecular Biology, Villum Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.

                Email: nils.f@ 123456bmb.sdu.dk

                Author information
                https://orcid.org/0000-0002-9797-5431
                https://orcid.org/0000-0002-3536-3886
                https://orcid.org/0000-0002-1462-4426
                https://orcid.org/0000-0002-9281-5287
                Article
                ACEL13342
                10.1111/acel.13342
                8045935
                33724708
                48e994e6-d498-48bc-b3d6-0d4edd3ff483
                © 2021 The Authors. Aging Cell published by the Anatomical Society and John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 08 February 2021
                : 06 January 2020
                : 23 February 2021
                Page count
                Figures: 7, Tables: 0, Pages: 13, Words: 8158
                Funding
                Funded by: The Danish Council for Independent Research, Natural Sciences
                Award ID: 6108‐00268A
                Categories
                Original Article
                Original Article
                Custom metadata
                2.0
                April 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.0.2 mode:remove_FC converted:14.04.2021

                Cell biology
                aging,caenorhabditiselegans,lipidomics,metabolomics,mitochondria,peroxisome,starvation,β‐oxidation

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