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      Assessing developability early in the discovery process for novel biologics

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          ABSTRACT

          Beyond potency, a good developability profile is a key attribute of a biological drug. Selecting and screening for such attributes early in the drug development process can save resources and avoid costly late-stage failures. Here, we review some of the most important developability properties that can be assessed early on for biologics. These include the influence of the source of the biologic, its biophysical and pharmacokinetic properties, and how well it can be expressed recombinantly. We furthermore present in silico, in vitro, and in vivo methods and techniques that can be exploited at different stages of the discovery process to identify molecules with liabilities and thereby facilitate the selection of the most optimal drug leads. Finally, we reflect on the most relevant developability parameters for injectable versus orally delivered biologics and provide an outlook toward what general trends are expected to rise in the development of biologics.

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          Most cited references244

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          PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions.

          In this study, we have revised the rules and parameters for one of the most commonly used empirical pKa predictors, PROPKA, based on better physical description of the desolvation and dielectric response for the protein. We have introduced a new and consistent approach to interpolate the description between the previously distinct classifications into internal and surface residues, which otherwise is found to give rise to an erratic and discontinuous behavior. Since the goal of this study is to lay out the framework and validate the concept, it focuses on Asp and Glu residues where the protein pKa values and structures are assumed to be more reliable. The new and improved implementation is evaluated and discussed; it is found to agree better with experiment than the previous implementation (in parentheses): rmsd = 0.79 (0.91) for Asp and Glu, 0.75 (0.97) for Tyr, 0.65 (0.72) for Lys, and 1.00 (1.37) for His residues. The most significant advance, however, is in reducing the number of outliers and removing unreasonable sensitivity to small structural changes that arise from classifying residues as either internal or surface.
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            NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data

            Abstract Major histocompatibility complex (MHC) molecules are expressed on the cell surface, where they present peptides to T cells, which gives them a key role in the development of T-cell immune responses. MHC molecules come in two main variants: MHC Class I (MHC-I) and MHC Class II (MHC-II). MHC-I predominantly present peptides derived from intracellular proteins, whereas MHC-II predominantly presents peptides from extracellular proteins. In both cases, the binding between MHC and antigenic peptides is the most selective step in the antigen presentation pathway. Therefore, the prediction of peptide binding to MHC is a powerful utility to predict the possible specificity of a T-cell immune response. Commonly MHC binding prediction tools are trained on binding affinity or mass spectrometry-eluted ligands. Recent studies have however demonstrated how the integration of both data types can boost predictive performances. Inspired by this, we here present NetMHCpan-4.1 and NetMHCIIpan-4.0, two web servers created to predict binding between peptides and MHC-I and MHC-II, respectively. Both methods exploit tailored machine learning strategies to integrate different training data types, resulting in state-of-the-art performance and outperforming their competitors. The servers are available at http://www.cbs.dtu.dk/services/NetMHCpan-4.1/ and http://www.cbs.dtu.dk/services/NetMHCIIpan-4.0/.
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              Continuous cultures of fused cells secreting antibody of predefined specificity.

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                Author and article information

                Journal
                MAbs
                MAbs
                mAbs
                Taylor & Francis
                1942-0862
                1942-0870
                23 February 2023
                2023
                23 February 2023
                : 15
                : 1
                : 2171248
                Affiliations
                [a ]Center for Molecular Biosciences Innsbruck (CMBI), Department of General, Inorganic and Theoretical Chemistry, University of Innsbruck; , Innsbruck, Austria
                [b ]Department of Biotechnology and Biomedicine, Technical University of Denmark; , Kongens Lyngby, Denmark
                [c ]Department of Immunology, University of Oslo; , Oslo, Norway
                [d ]Department of Immunology, University of Oslo, Oslo University Hospital Rikshospitalet; , Oslo, Norway
                [e ]Institute of Clinical Medicine and Department of Pharmacology, University of Oslo; , Oslo, Norway
                [f ]Authera AS, Oslo Science Park; , Oslo, Norway
                [g ]National Biologics Facility, Department of Biotechnology and Biomedicine, Technical University of Denmark; , Kongens Lyngby, Denmark
                [h ]Biotherapeutics Discovery, Boehringer Ingelheim Pharmaceuticals Inc; , Ridgefield, CT, USA
                [i ]Roche Pharma Research and Early Development, Large Molecule Research, Roche Innovation Center Munich; , Penzberg, Germany
                [j ]Department of Chemical Engineering, Pharmaceutical Sciences and Biomedical Engineering, Biointerfaces Institute, University of Michigan; , Ann Arbor, Michigan, USA
                [k ]Department of Medicine, Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge; , Cambridge, UK
                [l ]Maxion Therapeutics, Babraham Research Campus; , Cambridge, UK
                Author notes
                CONTACT Andreas H. Laustsen ahola@ 123456bio.dtu.dk Department of Biotechnology and Biomedicine, Technical University of Denmark; , DK-2800 Kongens Lyngby, Denmark
                [#]

                These authors contributed equally to this work

                Author information
                https://orcid.org/0000-0002-6811-6283
                https://orcid.org/0000-0002-2158-0601
                https://orcid.org/0000-0003-0527-0803
                https://orcid.org/0000-0003-2622-5032
                https://orcid.org/0000-0003-1710-1628
                https://orcid.org/0000-0002-1719-7677
                https://orcid.org/0000-0003-2979-5663
                https://orcid.org/0000-0002-7005-1642
                https://orcid.org/0000-0001-8042-7108
                https://orcid.org/0000-0003-2840-6398
                https://orcid.org/0000-0001-5737-006X
                https://orcid.org/0000-0001-7130-1917
                https://orcid.org/0000-0002-0985-2299
                https://orcid.org/0000-0002-3220-007X
                https://orcid.org/0000-0003-2195-0972
                https://orcid.org/0000-0001-6918-5574
                Article
                2171248
                10.1080/19420862.2023.2171248
                9980699
                36823021
                479eaa2c-a6bb-406e-b82b-def0eabf3fbb
                © 2023 The Author(s). Published with license by Taylor & Francis Group, LLC.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                Page count
                Figures: 4, References: 246, Pages: 1
                Categories
                Review
                Review

                Immunology
                biologics,developability,antibodies,drug development,biotherapeutics,drug discovery,drug properties,half-life,immunogenicity,manufacturability

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