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      Ligand binding and conformational changes of SUR1 subunit in pancreatic ATP-sensitive potassium channels

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          Abstract

          ATP-sensitive potassium channels (K ATP) are energy sensors on the plasma membrane. By sensing the intracellular ADP/ATP ratio of β-cells, pancreatic K ATP channels control insulin release and regulate metabolism at the whole body level. They are implicated in many metabolic disorders and diseases and are therefore important drug targets. Here, we present three structures of pancreatic K ATP channels solved by cryo-electron microscopy (cryo-EM), at resolutions ranging from 4.1 to 4.5 Å. These structures depict the binding site of the antidiabetic drug glibenclamide, indicate how Kir6.2 (inward-rectifying potassium channel 6.2) N-terminus participates in the coupling between the peripheral SUR1 (sulfonylurea receptor 1) subunit and the central Kir6.2 channel, reveal the binding mode of activating nucleotides, and suggest the mechanism of how Mg-ADP binding on nucleotide binding domains (NBDs) drives a conformational change of the SUR1 subunit.

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          The online version of this article (10.1007/s13238-018-0530-y) contains supplementary material, which is available to authorized users.

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          Screening and large-scale expression of membrane proteins in mammalian cells for structural studies.

          Structural, biochemical and biophysical studies of eukaryotic membrane proteins are often hampered by difficulties in overexpression of the candidate molecule. Baculovirus transduction of mammalian cells (BacMam), although a powerful method to heterologously express membrane proteins, can be cumbersome for screening and expression of multiple constructs. We therefore developed plasmid Eric Gouaux (pEG) BacMam, a vector optimized for use in screening assays, as well as for efficient production of baculovirus and robust expression of the target protein. In this protocol, we show how to use small-scale transient transfection and fluorescence-detection size-exclusion chromatography (FSEC) experiments using a GFP-His8-tagged candidate protein to screen for monodispersity and expression level. Once promising candidates are identified, we describe how to generate baculovirus, transduce HEK293S GnTI(-) (N-acetylglucosaminyltransferase I-negative) cells in suspension culture and overexpress the candidate protein. We have used these methods to prepare pure samples of chicken acid-sensing ion channel 1a (cASIC1) and Caenorhabditis elegans glutamate-gated chloride channel (GluCl) for X-ray crystallography, demonstrating how to rapidly and efficiently screen hundreds of constructs and accomplish large-scale expression in 4-6 weeks.
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            Mechanistic diversity in ATP-binding cassette (ABC) transporters.

            ABC transporters catalyze transport reactions, such as the high-affinity uptake of micronutrients into bacteria and the export of cytotoxic compounds from mammalian cells. Crystal structures of ABC domains and full transporters have provided a framework for formulating reaction mechanisms of ATP-driven substrate transport, but recent studies have suggested remarkable mechanistic diversity within this protein family. This review evaluates the differing mechanistic proposals and outlines future directions for the exploration of ABC-transporter-catalyzed reactions.
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              Fluorescence-detection size-exclusion chromatography for precrystallization screening of integral membrane proteins.

              Formation of well-ordered crystals of membrane proteins is a bottleneck for structure determination by X-ray crystallography. Nevertheless, one can increase the probability of successful crystallization by precrystallization screening, a process by which one analyzes the monodispersity and stability of the protein-detergent complex. Traditionally, this has required microgram to milligram quantities of purified protein and a concomitant investment of time and resources. Here, we describe a rapid and efficient precrystallization screening strategy in which the target protein is covalently fused to green fluorescent protein (GFP) and the resulting unpurified protein is analyzed by fluorescence-detection size-exclusion chromatography (FSEC). This strategy requires only nanogram quantities of unpurified protein and allows one to evaluate localization and expression level, the degree of monodispersity, and the approximate molecular mass. We show the application of this precrystallization screening to four membrane proteins derived from prokaryotic or eukaryotic organisms.
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                Author and article information

                Contributors
                chenlei2016@pku.edu.cn
                Journal
                Protein Cell
                Protein Cell
                Protein & Cell
                Higher Education Press (Beijing )
                1674-800X
                1674-8018
                28 March 2018
                28 March 2018
                June 2018
                : 9
                : 6
                : 553-567
                Affiliations
                [1 ]ISNI 0000 0001 2256 9319, GRID grid.11135.37, State Key Laboratory of Membrane Biology, Institute of Molecular Medicine, , Peking University, Beijing Key Laboratory of Cardiometabolic Molecular Medicine, ; Beijing, 100871 China
                [2 ]ISNI 0000 0001 2256 9319, GRID grid.11135.37, Peking-Tsinghua Center for Life Sciences, , Peking University, ; Beijing, 100871 China
                [3 ]ISNI 0000 0001 2256 9319, GRID grid.11135.37, Academy for Advanced Interdisciplinary Studies, , Peking University, ; Beijing, 100871 China
                Article
                530
                10.1007/s13238-018-0530-y
                5966361
                29594720
                470a5fc3-0c0f-4d9c-9c82-10eaaac13c7d
                © The Author(s) 2018

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

                History
                : 6 March 2018
                : 14 March 2018
                Categories
                Research Article
                Custom metadata
                © HEP and Springer-Verlag GmbH Germany, part of Springer Nature 2018

                katp,sur,abc transporter,glibenclamide,sulfonylurea,diabetes
                katp, sur, abc transporter, glibenclamide, sulfonylurea, diabetes

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