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      Proteomic analyses identify major vault protein as a prognostic biomarker for fatal prostate cancer

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          Abstract

          The demographic shift toward an older population will increase the number of prostate cancer cases. A challenge in the treatment of prostate cancer is to avoid undertreatment of patients at high risk of progression following curative treatment. These men can benefit from early salvage treatment. An explorative cohort consisting of tissue from 16 patients who underwent radical prostatectomy, and were either alive or had died from prostate cancer within 10 years postsurgery, was analyzed by mass spectrometry analysis. Following proteomic and bioinformatic analyses, major vault protein (MVP) was identified as a putative prognostic biomarker. A publicly available tissue proteomics dataset and a retrospective cohort of 368 prostate cancer patients were used for validation. The prognostic value of the MVP was verified by scoring immunohistochemical staining of a tissue microarray. High level of MVP was associated with more than 4-fold higher risk for death from prostate cancer (hazard ratio = 4.41, 95% confidence interval: 1.45–13.38; P = 0.009) in a Cox proportional hazard models, adjusted for Cancer of the Prostate Risk Assessments Post-surgical (CAPRA-S) score and perineural invasion. Decision curve analyses suggested an improved standardized net benefit, ranging from 0.06 to 0.18, of adding MVP onto CAPRA-S score. This observation was confirmed by receiver operator characteristics curve analyses for the CAPRA-S score versus CAPRA-S and MVP score (area under the curve: 0.58 versus 0.73). From these analyses, one can infer that MVP levels in combination with CAPRA-S score might add onto established risk parameters to identify patients with lethal prostate cancer.

          Abstract

          Mass spectrometry of an explorative cohort identified a promising biomarker, major vault protein. Using two independent validation cohorts, we verified an association between high MVP and adverse outcome. MVP was associated with prostate cancer-specific death independently of a composite risk model.

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          Most cited references39

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          Epidemiology of Prostate Cancer

          Prostate cancer is the second most frequent cancer diagnosis made in men and the fifth leading cause of death worldwide. Prostate cancer may be asymptomatic at the early stage and often has an indolent course that may require only active surveillance. Based on GLOBOCAN 2018 estimates, 1,276,106 new cases of prostate cancer were reported worldwide in 2018, with higher prevalence in the developed countries. Differences in the incidence rates worldwide reflect differences in the use of diagnostic testing. Prostate cancer incidence and mortality rates are strongly related to the age with the highest incidence being seen in elderly men (> 65 years of age). African-American men have the highest incidence rates and more aggressive type of prostate cancer compared to White men. There is no evidence yet on how to prevent prostate cancer; however, it is possible to lower the risk by limiting high-fat foods, increasing the intake of vegetables and fruits and performing more exercise. Screening is highly recommended at age 45 for men with familial history and African-American men. Up-to-date statistics on prostate cancer occurrence and outcomes along with a better understanding of the etiology and causative risk factors are essential for the primary prevention of this disease.
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            2016 update of the PRIDE database and its related tools

            The PRoteomics IDEntifications (PRIDE) database is one of the world-leading data repositories of mass spectrometry (MS)-based proteomics data. Since the beginning of 2014, PRIDE Archive (http://www.ebi.ac.uk/pride/archive/) is the new PRIDE archival system, replacing the original PRIDE database. Here we summarize the developments in PRIDE resources and related tools since the previous update manuscript in the Database Issue in 2013. PRIDE Archive constitutes a complete redevelopment of the original PRIDE, comprising a new storage backend, data submission system and web interface, among other components. PRIDE Archive supports the most-widely used PSI (Proteomics Standards Initiative) data standard formats (mzML and mzIdentML) and implements the data requirements and guidelines of the ProteomeXchange Consortium. The wide adoption of ProteomeXchange within the community has triggered an unprecedented increase in the number of submitted data sets (around 150 data sets per month). We outline some statistics on the current PRIDE Archive data contents. We also report on the status of the PRIDE related stand-alone tools: PRIDE Inspector, PRIDE Converter 2 and the ProteomeXchange submission tool. Finally, we will give a brief update on the resources under development ‘PRIDE Cluster’ and ‘PRIDE Proteomes’, which provide a complementary view and quality-scored information of the peptide and protein identification data available in PRIDE Archive.
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              Recent Global Patterns in Prostate Cancer Incidence and Mortality Rates

              Previous studies have reported significant variation in prostate cancer rates and trends mainly due to differences in detection practices, availability of treatment, and underlying genetic susceptibility.
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                Author and article information

                Journal
                Carcinogenesis
                Carcinogenesis
                carcin
                Carcinogenesis
                Oxford University Press (UK )
                0143-3334
                1460-2180
                May 2021
                20 February 2021
                20 February 2021
                : 42
                : 5
                : 685-693
                Affiliations
                [1 ] Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital , Oslo, Norway
                [2 ] Department of Medical Biology, The Arctic University of Norway , Tromsø, Norway
                [3 ] Department of Clinical Pathology, University Hospital of North Norway , Tromsø, Norway
                [4 ] Department of Immunology and Transfusion Medicine, Oslo University Hospital , Oslo, Norway
                [5 ] Department of Immunology, Proteomics Core Facility, Oslo University Hospital , Oslo, Norway
                [6 ] Department of Clinical Medicine, The Arctic University of Norway , Tromsø, Norway
                [7 ] Department of Tumorbiology, Bioinformatic Core Facility, Institute for Cancer Research, Oslo University Hospital , Oslo, Norway
                [8 ] Center for Bioinformatics, Department of Informatics, University of Oslo , Oslo, Norway
                [9 ] Department of Urology, Oslo University Hospital , Oslo, Norway
                [10 ] Institute of Clinical Medicine, University of Oslo , Oslo, Norway
                [11 ] Department of Oncology, University Hospital of North Norway , Tromsø, Norway
                Author notes
                To whom correspondence should be addressed. Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950 Nydalen, 0424 Oslo, Norway. Tel: +47 22781855; Email: hakon.ramberg@ 123456rr-research.no
                Author information
                https://orcid.org/0000-0002-5434-6029
                Article
                bgab015
                10.1093/carcin/bgab015
                8163044
                33609362
                454383a9-6f0a-4208-bd9c-8583ab822ee5
                © The Author(s) 2021. Published by Oxford University Press.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License ( http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

                History
                : 09 October 2020
                : 25 January 2021
                : 17 February 2021
                : 21 May 2021
                Page count
                Pages: 9
                Funding
                Funded by: MOVEMBER;
                Funded by: Norwegian Cancer Society, DOI 10.13039/100008730;
                Funded by: Northern Norway Regional Health Authority, DOI 10.13039/501100007137;
                Categories
                Cancer Biomarkers and Molecular Epidemiology
                Editor's Choice
                AcademicSubjects/MED00710

                Oncology & Radiotherapy
                Oncology & Radiotherapy

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