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      Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health

      review-article
      a , a , b , c , a , d , e
      Gut Microbes
      Taylor & Francis
      Carbohydrates, glycans, gut microbiome, diet, fiber, sialic acids, neu5gc, mucin-linked O-glycans, human milk oligosaccharides

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          ABSTRACT

          Gut microbiome composition depends heavily upon diet and has strong ties to human health. Dietary carbohydrates shape the gut microbiome by providing a potent nutrient source for particular microbes. This review explores how dietary carbohydrates in general, including individual monosaccharides and complex polysaccharides, influence the gut microbiome with subsequent effects on host health and disease. In particular, the effects of sialic acids, a prominent and influential class of monosaccharides, are discussed. Complex plant carbohydrates, such as dietary fiber, generally promote microbial production of compounds beneficial to the host while preventing degradation of host carbohydrates from colonic mucus. In contrast, simple and easily digestible sugars such as glucose are often associated with adverse effects on health and the microbiome. The monosaccharide class of sialic acids exerts a powerful but nuanced effect on gut microbiota. Sialic acid consumption (in monosaccharide form, or as part of human milk oligosaccharides or certain animal-based foods) drives the growth of organisms with sialic acid metabolism capabilities. Minor chemical modifications of Neu5Ac, the most common form of sialic acid, can alter these effects. All aspects of carbohydrate composition are therefore relevant to consider when designing dietary therapeutic strategies to alter the gut microbiome.

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          Most cited references60

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          Microbial ecology: human gut microbes associated with obesity.

          Two groups of beneficial bacteria are dominant in the human gut, the Bacteroidetes and the Firmicutes. Here we show that the relative proportion of Bacteroidetes is decreased in obese people by comparison with lean people, and that this proportion increases with weight loss on two types of low-calorie diet. Our findings indicate that obesity has a microbial component, which might have potential therapeutic implications.
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            Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

            Interactive Tree Of Life (http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone. The current version was completely redesigned and rewritten, utilizing current web technologies for speedy and streamlined processing. Numerous new features were introduced and several new data types are now supported. Trees with up to 100,000 leaves can now be efficiently displayed. Full interactive control over precise positioning of various annotation features and an unlimited number of datasets allow the easy creation of complex tree visualizations. iTOL 3 is the first tool which supports direct visualization of the recently proposed phylogenetic placements format. Finally, iTOL's account system has been redesigned to simplify the management of trees in user-defined workspaces and projects, as it is heavily used and currently handles already more than 500,000 trees from more than 10,000 individual users.
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              The role of short-chain fatty acids in microbiota–gut–brain communication

              Short-chain fatty acids (SCFAs), the main metabolites produced by bacterial fermentation of dietary fibre in the gastrointestinal tract, are speculated to have a key role in microbiota-gut-brain crosstalk. However, the pathways through which SCFAs might influence psychological functioning, including affective and cognitive processes and their neural basis, have not been fully elucidated. Furthermore, research directly exploring the role of SCFAs as potential mediators of the effects of microbiota-targeted interventions on affective and cognitive functioning is sparse, especially in humans. This Review summarizes existing knowledge on the potential of SCFAs to directly or indirectly mediate microbiota-gut-brain interactions. The effects of SCFAs on cellular systems and their interaction with gut-brain signalling pathways including immune, endocrine, neural and humoral routes are described. The effects of microbiota-targeted interventions such as prebiotics, probiotics and diet on psychological functioning and the putative mediating role of SCFA signalling will also be discussed, as well as the relationship between SCFAs and psychobiological processes. Finally, future directions to facilitate direct investigation of the effect of SCFAs on psychological functioning are outlined.
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                Author and article information

                Journal
                Gut Microbes
                Gut Microbes
                Gut Microbes
                Taylor & Francis
                1949-0976
                1949-0984
                21 February 2021
                2021
                21 February 2021
                : 13
                : 1
                : 1-18
                Affiliations
                [a ]Department of Pediatrics, University of California; , San Diego, La Jolla, USA
                [b ]Sanford Burnham Prebys Medical Discovery Institute; , La Jolla, USA
                [c ]A.A. Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences; , Moscow, Russia
                [d ]Center for Microbiome Innovation, University of California; , San Diego, La Jolla, USA
                [e ]Department of Bioengineering, University of California; , San Diego, La Jolla, USA
                Author notes
                CONTACT Karsten Zengler kzengler@ 123456ucsd.edu Department of Pediatrics, University of California; , San Diego9500Gilman Drive, La Jolla, USA.
                Author information
                https://orcid.org/0000-0001-7306-6316
                https://orcid.org/0000-0002-0475-6177
                https://orcid.org/0000-0002-8062-3296
                Article
                1869502
                10.1080/19490976.2020.1869502
                7899658
                33615984
                4413fbc6-c88d-43a0-9149-24e466abbdfd
                © 2021 The Author(s). Published with license by Taylor & Francis Group, LLC.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                Page count
                Figures: 4, Tables: 1, References: 148, Pages: 18
                Categories
                Review
                Review

                Microbiology & Virology
                carbohydrates,glycans,gut microbiome,diet,fiber,sialic acids,neu5gc,mucin-linked o-glycans,human milk oligosaccharides

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