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      A simple parametric representation of the Hodgkin-Huxley model

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      PLoS ONE
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          Abstract

          The Hodgkin-Huxley model, decades after its first presentation, is still a reference model in neuroscience as it has successfully reproduced the electrophysiological activity of many organisms. The primary signal in the model represents the membrane potential of a neuron. A simple representation of this signal is presented in this paper. The new proposal is an adapted Frequency Modulated Möbius multicomponent model defined as a signal plus error model in which the signal is decomposed as a sum of waves. The main strengths of the method are the simple parametric formulation, the interpretability and flexibility of the parameters that describe and discriminate the waveforms, the estimators’ identifiability and accuracy, and the robustness against noise. The approach is validated with a broad simulation experiment of Hodgkin-Huxley signals and real data from squid giant axons. Interesting differences between simulated and real data emerge from the comparison of the parameter configurations. Furthermore, the potential of the FMM parameters to predict Hodgkin-Huxley model parameters is shown using different Machine Learning methods. Finally, promising contributions of the approach in Spike Sorting and cell-type classification are detailed.

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          Most cited references42

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          PhysioBank, PhysioToolkit, and PhysioNet

          Circulation, 101(23)
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            Impulses and Physiological States in Theoretical Models of Nerve Membrane

            Van der Pol's equation for a relaxation oscillator is generalized by the addition of terms to produce a pair of non-linear differential equations with either a stable singular point or a limit cycle. The resulting "BVP model" has two variables of state, representing excitability and refractoriness, and qualitatively resembles Bonhoeffer's theoretical model for the iron wire model of nerve. This BVP model serves as a simple representative of a class of excitable-oscillatory systems including the Hodgkin-Huxley (HH) model of the squid giant axon. The BVP phase plane can be divided into regions corresponding to the physiological states of nerve fiber (resting, active, refractory, enhanced, depressed, etc.) to form a "physiological state diagram," with the help of which many physiological phenomena can be summarized. A properly chosen projection from the 4-dimensional HH phase space onto a plane produces a similar diagram which shows the underlying relationship between the two models. Impulse trains occur in the BVP and HH models for a range of constant applied currents which make the singular point representing the resting state unstable.
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              Simple model of spiking neurons.

              A model is presented that reproduces spiking and bursting behavior of known types of cortical neurons. The model combines the biologically plausibility of Hodgkin-Huxley-type dynamics and the computational efficiency of integrate-and-fire neurons. Using this model, one can simulate tens of thousands of spiking cortical neurons in real time (1 ms resolution) using a desktop PC.
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                Author and article information

                Contributors
                Role: Data curationRole: MethodologyRole: Writing – original draftRole: Writing – review & editing
                Role: MethodologyRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS One
                plos
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                2021
                22 July 2021
                : 16
                : 7
                : e0254152
                Affiliations
                [001] Department of Statistics and Operations Research, Universidad de Valladolid, Valladolid, Spain
                University of South Florida, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0001-5450-9580
                Article
                PONE-D-21-01993
                10.1371/journal.pone.0254152
                8297874
                34292948
                43deccda-b67f-4b8c-a44f-88cdf31c4b45
                © 2021 Rodríguez-Collado, Rueda

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 19 January 2021
                : 21 June 2021
                Page count
                Figures: 6, Tables: 7, Pages: 19
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100014440, Ministerio de Ciencia, Innovación y Universidades;
                Award ID: PID2019-106363RB-I00
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100007515, Universidad de Valladolid;
                Award ID: Call for predoctoral contracts of the UVa 2020, co-financed by the Banco Santander.
                Award Recipient :
                The authors gratefully acknowledge the financial support received by the Spanish Ministerio de Ciencia e Innovación, Universidad de Valladolid and Banco Santander [PID2019-106363RB-I00 to C.R. and Call for predoctoral contracts of the UVa 2020 to A.R-C.].
                Categories
                Research Article
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Neurons
                Biology and Life Sciences
                Neuroscience
                Cellular Neuroscience
                Neurons
                Biology and Life Sciences
                Cell Biology
                Signal Transduction
                Cell Signaling
                Hedgehog Signaling
                Biology and Life Sciences
                Physiology
                Electrophysiology
                Membrane Potential
                Biology and Life Sciences
                Neuroscience
                Cellular Neuroscience
                Engineering and Technology
                Signal Processing
                Biology and Life Sciences
                Physiology
                Electrophysiology
                Membrane Potential
                Action Potentials
                Biology and Life Sciences
                Physiology
                Electrophysiology
                Neurophysiology
                Action Potentials
                Biology and Life Sciences
                Neuroscience
                Neurophysiology
                Action Potentials
                Computer and Information Sciences
                Software Engineering
                Programming Languages
                Engineering and Technology
                Software Engineering
                Programming Languages
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Neurons
                Nerve Fibers
                Axons
                Biology and Life Sciences
                Neuroscience
                Cellular Neuroscience
                Neurons
                Nerve Fibers
                Axons
                Custom metadata
                The data underlying the results presented in the study are available at https://www.kaggle.com/arodcol/simple-parametric-representation-of-the-hh-model, doi: 10.34740/KAGGLE/DSV/2365326.

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