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      UNC13A in amyotrophic lateral sclerosis: from genetic association to therapeutic target

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          Abstract

          Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease with limited treatment options and an incompletely understood pathophysiology. Although genomewide association studies (GWAS) have advanced our understanding of the disease, the precise manner in which risk polymorphisms contribute to disease pathogenesis remains unclear. Of relevance, GWAS have shown that a polymorphism (rs12608932) in the UNC13A gene is associated with risk for both ALS and frontotemporal dementia (FTD). Homozygosity for the C-allele at rs12608932 modifies the ALS phenotype, as these patients are more likely to have bulbar-onset disease, cognitive impairment and FTD at baseline as well as shorter survival. UNC13A is expressed in neuronal tissue and is involved in maintaining synaptic active zones, by enabling the priming and docking of synaptic vesicles. In the absence of functional TDP-43, risk variants in UNC13A lead to the inclusion of a cryptic exon in UNC13A messenger RNA, subsequently leading to nonsense mediated decay, with loss of functional protein. Depletion of UNC13A leads to impaired neurotransmission. Recent discoveries have identified UNC13A as a potential target for therapy development in ALS, with a confirmatory trial with lithium carbonate in UNC13A cases now underway and future approaches with antisense oligonucleotides currently under consideration. Considering UNC13A is a potent phenotypic modifier, it may also impact clinical trial outcomes. This present review describes the path from the initial discovery of UNC13A as a risk gene in ALS to the current therapeutic options being explored and how knowledge of its distinct phenotype needs to be taken into account in future trials.

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          Most cited references101

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          The mutational constraint spectrum quantified from variation in 141,456 humans

          Genetic variants that inactivate protein-coding genes are a powerful source of information about the phenotypic consequences of gene disruption: genes that are crucial for the function of an organism will be depleted of such variants in natural populations, whereas non-essential genes will tolerate their accumulation. However, predicted loss-of-function variants are enriched for annotation errors, and tend to be found at extremely low frequencies, so their analysis requires careful variant annotation and very large sample sizes 1 . Here we describe the aggregation of 125,748 exomes and 15,708 genomes from human sequencing studies into the Genome Aggregation Database (gnomAD). We identify 443,769 high-confidence predicted loss-of-function variants in this cohort after filtering for artefacts caused by sequencing and annotation errors. Using an improved model of human mutation rates, we classify human protein-coding genes along a spectrum that represents tolerance to inactivation, validate this classification using data from model organisms and engineered human cells, and show that it can be used to improve the power of gene discovery for both common and rare diseases.
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            THE GENETICS OF CAENORHABDITIS ELEGANS

            Methods are described for the isolation, complementation and mapping of mutants of Caenorhabditis elegans, a small free-living nematode worm. About 300 EMS-induced mutants affecting behavior and morphology have been characterized and about one hundred genes have been defined. Mutations in 77 of these alter the movement of the animal. Estimates of the induced mutation frequency of both the visible mutants and X chromosome lethals suggests that, just as in Drosophila, the genetic units in C.elegans are large.
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              Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS.

              Several families have been reported with autosomal-dominant frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS), genetically linked to chromosome 9p21. Here, we report an expansion of a noncoding GGGGCC hexanucleotide repeat in the gene C9ORF72 that is strongly associated with disease in a large FTD/ALS kindred, previously reported to be conclusively linked to chromosome 9p. This same repeat expansion was identified in the majority of our families with a combined FTD/ALS phenotype and TDP-43-based pathology. Analysis of extended clinical series found the C9ORF72 repeat expansion to be the most common genetic abnormality in both familial FTD (11.7%) and familial ALS (23.5%). The repeat expansion leads to the loss of one alternatively spliced C9ORF72 transcript and to formation of nuclear RNA foci, suggesting multiple disease mechanisms. Our findings indicate that repeat expansion in C9ORF72 is a major cause of both FTD and ALS. Copyright © 2011 Elsevier Inc. All rights reserved.
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                Author and article information

                Journal
                J Neurol Neurosurg Psychiatry
                J Neurol Neurosurg Psychiatry
                jnnp
                jnnp
                Journal of Neurology, Neurosurgery, and Psychiatry
                BMJ Publishing Group (BMA House, Tavistock Square, London, WC1H 9JR )
                0022-3050
                1468-330X
                August 2023
                3 February 2023
                : 94
                : 8
                : 649-656
                Affiliations
                [1 ] departmentDepartment of Neurology , UMC Utrecht Brain Center Rudolf Magnus , Utrecht, The Netherlands
                [2 ] departmentUCL Queen Square Motor Neuron Disease Centre, Department of Neuromuscular Diseases , UCL Queen Square Institute of Neurology , London, UK
                [3 ] departmentBiostatistics & Research Support, Julius Center for Health Sciences and Primary Care , UMC Utrecht , Utrecht, The Netherlands
                [4 ] departmentDepartment of Translational Neuroscience , UMC Utrecht Brain Center Rudolf Magnus , Utrecht, The Netherlands
                [5 ] departmentDepartment of Neurology , KU Leuven Hospital , Leuven, Belgium
                [6 ] departmentLaboratory of Neurobiology , VIB KU Leuven Center for Brain and Disease Research , Leuven, Belgium
                [7 ] departmentDepartment of Clinical Neuroscience , Karolinska Institute , Stockholm, Sweden
                [8 ] departmentBushell Chair of Neurology , Brain and Mind Centre, University of Sydney , Sydney, New South Wales, Australia
                [9 ] departmentNeurology , Royal Prince Alfred Hospital , Camperdown, New South Wales, Australia
                [10 ] departmentDepartment of Neurology , King's College Hospital , London, UK
                Author notes
                [Correspondence to ] Dr Michael A van Es, Department of Neurology, UMC Utrecht Brain Center Rudolf Magnus, Utrecht 3584 CG, The Netherlands; M.A.vanEs@ 123456umcutrecht.nl
                Author information
                http://orcid.org/0000-0002-0198-5740
                http://orcid.org/0000-0002-7132-5967
                http://orcid.org/0000-0002-4010-2357
                http://orcid.org/0000-0001-5572-9657
                http://orcid.org/0000-0001-9054-026X
                http://orcid.org/0000-0002-4924-7712
                Article
                jnnp-2022-330504
                10.1136/jnnp-2022-330504
                10359588
                36737245
                40e76793-088a-489c-adcc-aa914cafd891
                © Author(s) (or their employer(s)) 2023. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.

                This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See:  http://creativecommons.org/licenses/by-nc/4.0/.

                History
                : 05 October 2022
                : 10 January 2023
                Categories
                Neurodegeneration
                1506
                Review
                Custom metadata
                unlocked

                Surgery
                als,frontotemporal dementia,neurobiology,neurogenetics,neuromuscular
                Surgery
                als, frontotemporal dementia, neurobiology, neurogenetics, neuromuscular

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