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      Activation modes in biocatalytic radical cyclization reactions

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          Abstract

          Radical cyclizations are essential reactions in the biosynthesis of secondary metabolites and the chemical synthesis of societally valuable molecules. In this review, we highlight the general mechanisms utilized in biocatalytic radical cyclizations. We specifically highlight cytochrome P450 monooxygenases (P450s) involved in the biosynthesis of mycocyclosin and vancomycin, nonheme iron- and α-ketoglutarate-dependent dioxygenases (Fe/αKGDs) used in the biosynthesis of kainic acid, scopolamine, and isopenicillin N, and radical S-adenosylmethionine (SAM) enzymes that facilitate the biosynthesis of oxetanocin A, menaquinone, and F420. Beyond natural mechanisms, we also examine repurposed flavin-dependent “ene”-reductases (ERED) for non-natural radical cyclization. Overall, these general mechanisms underscore the opportunity for enzymes to augment and enhance the synthesis of complex molecules using radical mechanisms.

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          Analysis of the structural diversity, substitution patterns, and frequency of nitrogen heterocycles among U.S. FDA approved pharmaceuticals.

          Nitrogen heterocycles are among the most significant structural components of pharmaceuticals. Analysis of our database of U.S. FDA approved drugs reveals that 59% of unique small-molecule drugs contain a nitrogen heterocycle. In this review we report on the top 25 most commonly utilized nitrogen heterocycles found in pharmaceuticals. The main part of our analysis is divided into seven sections: (1) three- and four-membered heterocycles, (2) five-, (3) six-, and (4) seven- and eight-membered heterocycles, as well as (5) fused, (6) bridged bicyclic, and (7) macrocyclic nitrogen heterocycles. Each section reveals the top nitrogen heterocyclic structures and their relative impact for that ring type. For the most commonly used nitrogen heterocycles, we report detailed substitution patterns, highlight common architectural cores, and discuss unusual or rare structures.
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            Catalytic Asymmetric Synthesis of Oxindoles Bearing a Tetrasubstituted Stereocenter at the C-3 Position

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              Cytochrome P450 compound I: capture, characterization, and C-H bond activation kinetics.

              Cytochrome P450 enzymes are responsible for the phase I metabolism of approximately 75% of known pharmaceuticals. P450s perform this and other important biological functions through the controlled activation of C-H bonds. Here, we report the spectroscopic and kinetic characterization of the long-sought principal intermediate involved in this process, P450 compound I (P450-I), which we prepared in approximately 75% yield by reacting ferric CYP119 with m-chloroperbenzoic acid. The Mössbauer spectrum of CYP119-I is similar to that of chloroperoxidase compound I, although its electron paramagnetic resonance spectrum reflects an increase in |J|/D, the ratio of the exchange coupling to the zero-field splitting. CYP119-I hydroxylates the unactivated C-H bonds of lauric acid [D(C-H) ~ 100 kilocalories per mole], with an apparent second-order rate constant of k(app) = 1.1 × 10(7) per molar per second at 4°C. Direct measurements put a lower limit of k ≥ 210 per second on the rate constant for bound substrate oxidation, whereas analyses involving kinetic isotope effects predict a value in excess of 1400 per second.
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                Author and article information

                Contributors
                Journal
                J Ind Microbiol Biotechnol
                J Ind Microbiol Biotechnol
                jimb
                Journal of Industrial Microbiology & Biotechnology
                Oxford University Press
                1367-5435
                1476-5535
                April 2021
                01 March 2021
                01 March 2021
                : 48
                : 3-4
                : kuab021
                Affiliations
                Department of Chemistry, Princeton University , Princeton, NJ 08544, USA
                Department of Chemistry, Princeton University , Princeton, NJ 08544, USA
                Department of Chemistry, Princeton University , Princeton, NJ 08544, USA
                Author notes
                Correspondence should be addressed to: Todd K. Hyster at thyster@ 123456princeton.edu

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0003-3560-355X
                Article
                kuab021
                10.1093/jimb/kuab021
                8210684
                33674826
                40da825a-d711-4a4d-9d2d-8883ad8875f6
                © The Author(s) 2021. Published by Oxford University Press on behalf of Society of Industrial Microbiology and Biotechnology.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 30 November 2020
                : 26 February 2021
                Page count
                Pages: 18
                Funding
                Funded by: NIGMS, DOI 10.13039/100000057;
                Award ID: R01 GM127703
                Categories
                Biocatalysis
                Mini-Review
                AcademicSubjects/SCI01150
                AcademicSubjects/SCI00540

                Biotechnology
                biocatalysis,radical cyclization,photoenzymatic reaction,natural product synthesis,ene-reductase

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