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      Variable retention harvesting influences belowground plant-fungal interactions of Nothofagus pumilio seedlings in forests of southern Patagonia

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          Abstract

          Background

          The post-harvest recovery and sustained productivity of Nothofagus pumilio forests in Tierra del Fuego may be affected by the abundance and composition of ectomycorrhizal fungi (EMF). Timber harvesting alters EMF community structure in many managed forests, but the impacts of harvesting can vary with the management strategy. The implementation of variable retention (VR) management can maintain, increase, or decrease the diversity of many species, but the effects of VR on EMF in the forests of southern Patagonia have not been studied, nor has the role of EMF in the regeneration process of these forests.

          Methods

          We evaluated the effects of VR management on the EMF community associated with N. pumilio seedlings. We quantified the abundance, composition, and diversity of EMF across aggregate (AR) and dispersed (DR) retention sites within VR managed areas, and compared them to primary forest (PF) unmanaged stands. EMF assemblage and taxonomic identities were determined by ITS-rDNA sequencing of individual root tips sampled from 280 seedlings across three landscape replicates. To better understand seedling performance, we tested the relationships between EMF colonization, EMF taxonomic composition, seedling biomass, and VR treatment.

          Results

          The majority of EMF taxa were Basidiomycota belonging to the families Cortinariaceae ( n = 29), Inocybaceae ( n = 16), and Thelephoraceae ( n = 8), which was in agreement with other studies of EMF diversity in Nothofagus forests. EMF richness and colonization was reduced in DR compared to AR and PF. Furthermore, EMF community composition was similar between AR and PF, but differed from the composition in DR. EMF community composition was correlated with seedling biomass and soil moisture. The presence of Peziza depressa was associated with higher seedling biomass and greater soil moisture, while Inocybe fibrillosibrunnea and Cortinarius amoenus were associated with reduced seedling biomass and lower soil moisture. Seedling biomass was more strongly related to retention type than EMF colonization, richness, or composition.

          Discussion

          Our results demonstrate reduced EMF attributes and altered composition in VR treatments relative to PF stands, with stronger impacts in DR compared to AR. This suggests that VR has the potential to improve the conservation status of managed stands by supporting native EMF in AR. Our results also demonstrate the complex linkages between retention treatments, fungal community composition, and tree growth at individual and stand scales.

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          Most cited references73

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          AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS

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            Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

            Increased reliance on computational approaches in the life sciences has revealed grave concerns about how accessible and reproducible computation-reliant results truly are. Galaxy http://usegalaxy.org, an open web-based platform for genomic research, addresses these problems. Galaxy automatically tracks and manages data provenance and provides support for capturing the context and intent of computational methods. Galaxy Pages are interactive, web-based documents that provide users with a medium to communicate a complete computational analysis.
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              A meta-analysis of context-dependency in plant response to inoculation with mycorrhizal fungi.

              Ecology Letters (2010) 13: 394-407 Abstract Mycorrhizal fungi influence plant growth, local biodiversity and ecosystem function. Effects of the symbiosis on plants span the continuum from mutualism to parasitism. We sought to understand this variation in symbiotic function using meta-analysis with information theory-based model selection to assess the relative importance of factors in five categories: (1) identity of the host plant and its functional characteristics, (2) identity and type of mycorrhizal fungi (arbuscular mycorrhizal vs. ectomycorrhizal), (3) soil fertility, (4) biotic complexity of the soil and (5) experimental location (laboratory vs. field). Across most subsets of the data, host plant functional group and N-fertilization were surprisingly much more important in predicting plant responses to mycorrhizal inoculation ('plant response') than other factors. Non-N-fixing forbs and woody plants and C(4) grasses responded more positively to mycorrhizal inoculation than plants with N-fixing bacterial symbionts and C(3) grasses. In laboratory studies of the arbuscular mycorrhizal symbiosis, plant response was more positive when the soil community was more complex. Univariate analyses supported the hypothesis that plant response is most positive when plants are P-limited rather than N-limited. These results emphasize that mycorrhizal function depends on both abiotic and biotic context, and have implications for plant community theory and restoration ecology.
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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                peerj
                peerj
                PeerJ
                PeerJ Inc. (San Francisco, USA )
                2167-8359
                6 July 2018
                2018
                : 6
                : e5008
                Affiliations
                [1 ]Center for Ecosystem Science and Society, Northern Arizona University , Flagstaff, AZ, United States of America
                [2 ]Institute of Arctic Biology, University of Alaska—Fairbanks , Fairbanks, AK, United States of America
                [3 ]Department of Biology, University of New Mexico , Albuquerque, NM, United States of America
                [4 ]Pacific Northwest Research Station, Boreal Ecology Cooperative Research Unit, US Forest Service , Fairbanks, AK, United States of America
                [5 ]Centro Austral de Investigaciones Científicas (CADIC), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) , Ushuaia, Tierra del Fuego, Argentina
                [6 ]Instituto de Ciencias Polares, Ambiente y Recursos Naturales (ICPA), Universidad Nacional de Tierra del Fuego (UNTDF) , Ushuaia, Tierra del Fuego, Argentina
                Article
                5008
                10.7717/peerj.5008
                6037133
                405601ab-84d6-43a5-9b96-0b753ebd52be
                ©2018 Hewitt et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 2 March 2018
                : 29 May 2018
                Funding
                Funded by: US National Science Foundation (NSF) International Research Experience for Students
                Award ID: OISE 0854350
                Funded by: NSF Graduate Research Fellowship
                Award ID: DGE-0639280
                Award ID: 1242789
                Funded by: Alaska EPSCoR
                Award ID: EPS-0701898
                Funded by: Bonanza Creek Long-Term Ecological Research
                Award ID: NSF DEB-1636476
                Funded by: USDA Forest Service PNW Research Station
                Award ID: JVA-11261952-231
                Rebecca E. Hewitt conducted this study as part of a US National Science Foundation (NSF) International Research Experience for Students grant (OISE 0854350) to Christopher B. Anderson. Further support to Rebecca E. Hewitt came from an NSF Graduate Research Fellowship (DGE-0639280 and 1242789), Alaska EPSCoR (EPS-0701898), as well as from the Bonanza Creek Long-Term Ecological Research (NSF DEB-1636476 and USDA Forest Service PNW Research Station JVA-11261952-231). Lab reagents and materials were funded by an NSF grant (ARC-0632332) to Donald Lee Taylor and by the University of North Texas (Office of the Vice-President for Research) to Christopher B. Anderson. There was no additional external funding received for this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Biodiversity
                Ecology
                Mycology
                Forestry

                lenga,dispersed retention,ectomycorrhizal fungi,tierra del fuego,forest sustainability,recruitment,silviculture,aggregate retention

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