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      Criteria to evaluate patterns of segmental and complete aneuploidies in preimplantation genetic testing for aneuploidy results suggestive of an inherited balanced translocation or inversion

      research-article
      , Ph.D., C.G.C. a , , , M.S. a , , B.S. a , , M.P.H. b , , Ph.D. a , , Ph.D. a
      F&S Reports
      Elsevier
      PGT-A results, segmental aneuploidy, translocations, inversions, pattern detection

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          Abstract

          Objective

          To define criteria for determining when preimplantation genetic testing for aneuploidy (PGT-A) results are suggestive of a potential balanced chromosomal rearrangement in the egg or sperm source and warrant karyotyping.

          Design

          Performance evaluation of criteria developed to assess PGT-A results for patterns of imbalances suggestive of a balanced chromosomal rearrangement in the egg or sperm source.

          Setting

          A single PGT-A laboratory and multiple in vitro fertilization centers.

          Patients

          Reproductive couples who underwent routine PGT-A testing.

          Interventions

          Karyotyping of reproductive couples for whom patterns of imbalances observed in PGT-A results suggested a balanced chromosomal rearrangement in the egg or sperm source.

          Main Outcome Measures

          Correct or incorrect flagging of predicted translocation in either the egg or sperm source based on chromosome analysis.

          Results

          Proposed criteria correctly predicted a balanced reciprocal translocation in 97% of cases (n = 33), a (13;14) Robertsonian translocation in all cases (n = 3), and an inversion in all cases (n = 2). Other criteria evaluated were determined to be ineffective because of relatively low occurrences that met the criteria and/or low predictive value.

          Conclusions

          Our results showed that the proposed criteria were effective for evaluating patterns of imbalances observed in PGT-A results suggestive of a potential chromosomal rearrangement in the egg or sperm source. Our proposed criteria can be employed by clinicians in the in vitro fertilization setting in combination with a patient’s reproductive history to identify PGT-A patients who are likely carriers of balanced chromosomal rearrangements.

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          Most cited references31

          • Record: found
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          • Article: not found

          Evaluation and treatment of recurrent pregnancy loss: a committee opinion.

          (2012)
          The majority of miscarriages are sporadic and most result from genetic causes that are greatly influenced by maternal age. Recurrent pregnancy loss (RPL) is defined by two or more failed clinical pregnancies, and up to 50% of cases of RPL will not have a clearly defined etiology. Copyright © 2012 American Society for Reproductive Medicine. Published by Elsevier Inc. All rights reserved.
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            De novo balanced chromosome rearrangements and extra marker chromosomes identified at prenatal diagnosis: clinical significance and distribution of breakpoints.

            A questionnaire sent to major cytogenetics laboratories in the United States and Canada over a 10-year period collected data on the frequency and outcome of cases with either apparently balanced de novo rearrangements or de novo supernumerary marker chromosomes detected at amniocentesis. Of 377,357 reported amniocenteses, approximately 1/2,000 had a de novo reciprocal translocation, 1/9,000 a Robertsonian translocation, 1/10,000 a de novo inversion, and 1/2,500 an extra structurally abnormal chromosome of unidentifiable origin. The risk of a serious congenital anomaly was estimated to be 6.1% (n = 163) for de novo reciprocal translocations, 3.7% (n = 51) for Robertsonian translocations, and 9.4% (n = 32) for inversions. The combined risk for reciprocal translocations and inversions was 6.7% (95% confidence limits 3.1%-10.3%). The risk of abnormality for extra nonsatellited marker chromosomes was 14.7% (n = 68), and that for satellited marker chromosomes was 10.9% (n = 55). In non-Robertsonian rearrangements, distribution of breakpoints among chromosomes was not as would be expected strictly on the basis of length. Most breaks were stated to occur within G-negative bands, but there was little evidence of particular hot spots among these bands. Nevertheless, there did appear to be a correlation between those bands in which breakage was observed most often and those bands where common or rare fragile sites have been described.
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              Estimates of the frequency of chromosome abnormalities detectable in unselected newborns using moderate levels of banding.

              Data on structural chromosome abnormalities identified during prenatal diagnosis were used to estimate the number of such abnormalities that would be detectable in an unselected series of newborns using moderate levels of banding (400 to 500 bands). These estimates were compared with the rates detected in nonbanded surveys of newborns. Between 1976 and 1990 prenatal diagnosis using banding techniques was carried out in our laboratory on 14,677 women aged 35 and over. Among these, we detected 112 structural rearrangements, 32 unbalanced and 80 balanced. These figures were adjusted by two methods to give an estimate of the frequency of structural abnormalities in the newborn. Our data suggest that the use of moderate levels of banding increases the frequency of unbalanced structural abnormalities from 0.052 to 0.061% and of balanced structural abnormalities from 0.212 to 0.522%. Thus, the total number of chromosome abnormalities detectable in the newborn is increased from 0.60% in unbanded preparations to 0.92% in banded preparations.
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                Author and article information

                Contributors
                Journal
                F S Rep
                F S Rep
                F&S Reports
                Elsevier
                2666-3341
                24 December 2020
                March 2021
                24 December 2020
                : 2
                : 1
                : 72-79
                Affiliations
                [a ]Igenomix Los Angeles, Torrance, California
                [b ]Igenomix Miami, Miami, Florida
                Author notes
                []Correspondence: Alyssa C Snider, Ph.D., C.G.C., 383 Van Ness Ave #1605, Torrance, CA 90501. alyssa.snider@ 123456igenomix.com
                Article
                S2666-3341(20)30129-X
                10.1016/j.xfre.2020.12.003
                8244368
                34223276
                3fe6ce07-3a3f-4e02-a828-cf8403d990de
                © 2020 The Author(s)

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 19 August 2020
                : 19 November 2020
                : 12 December 2020
                Categories
                Original Article

                pgt-a results,segmental aneuploidy,translocations,inversions,pattern detection

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