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      Transfer of DNA from Bacteria to Eukaryotes

      review-article
      ,
      mBio
      American Society for Microbiology

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          ABSTRACT

          Historically, the members of the Agrobacterium genus have been considered the only bacterial species naturally able to transfer and integrate DNA into the genomes of their eukaryotic hosts. Yet, increasing evidence suggests that this ability to genetically transform eukaryotic host cells might be more widespread in the bacterial world. Indeed, analyses of accumulating genomic data reveal cases of horizontal gene transfer from bacteria to eukaryotes and suggest that it represents a significant force in adaptive evolution of eukaryotic species. Specifically, recent reports indicate that bacteria other than Agrobacterium, such as Bartonella henselae (a zoonotic pathogen), Rhizobium etli (a plant-symbiotic bacterium related to Agrobacterium), or even Escherichia coli, have the ability to genetically transform their host cells under laboratory conditions. This DNA transfer relies on type IV secretion systems (T4SSs), the molecular machines that transport macromolecules during conjugative plasmid transfer and also during transport of proteins and/or DNA to the eukaryotic recipient cells. In this review article, we explore the extent of possible transfer of genetic information from bacteria to eukaryotic cells as well as the evolutionary implications and potential applications of this transfer.

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          Most cited references77

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          Genome-wide insertional mutagenesis of Arabidopsis thaliana.

          J Alonso (2003)
          Over 225,000 independent Agrobacterium transferred DNA (T-DNA) insertion events in the genome of the reference plant Arabidopsis thaliana have been created that represent near saturation of the gene space. The precise locations were determined for more than 88,000 T-DNA insertions, which resulted in the identification of mutations in more than 21,700 of the approximately 29,454 predicted Arabidopsis genes. Genome-wide analysis of the distribution of integration events revealed the existence of a large integration site bias at both the chromosome and gene levels. Insertion mutations were identified in genes that are regulated in response to the plant hormone ethylene.
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            Horizontal gene transfer in eukaryotic evolution.

            Horizontal gene transfer (HGT; also known as lateral gene transfer) has had an important role in eukaryotic genome evolution, but its importance is often overshadowed by the greater prevalence and our more advanced understanding of gene transfer in prokaryotes. Recurrent endosymbioses and the generally poor sampling of most nuclear genes from diverse lineages have also complicated the search for transferred genes. Nevertheless, the number of well-supported cases of transfer from both prokaryotes and eukaryotes, many with significant functional implications, is now expanding rapidly. Major recent trends include the important role of HGT in adaptation to certain specialized niches and the highly variable impact of HGT in different lineages.
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              The genome of the social amoeba Dictyostelium discoideum.

              The social amoebae are exceptional in their ability to alternate between unicellular and multicellular forms. Here we describe the genome of the best-studied member of this group, Dictyostelium discoideum. The gene-dense chromosomes of this organism encode approximately 12,500 predicted proteins, a high proportion of which have long, repetitive amino acid tracts. There are many genes for polyketide synthases and ABC transporters, suggesting an extensive secondary metabolism for producing and exporting small molecules. The genome is rich in complex repeats, one class of which is clustered and may serve as centromeres. Partial copies of the extrachromosomal ribosomal DNA (rDNA) element are found at the ends of each chromosome, suggesting a novel telomere structure and the use of a common mechanism to maintain both the rDNA and chromosomal termini. A proteome-based phylogeny shows that the amoebozoa diverged from the animal-fungal lineage after the plant-animal split, but Dictyostelium seems to have retained more of the diversity of the ancestral genome than have plants, animals or fungi.
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                Author and article information

                Journal
                mBio
                MBio
                mbio
                mbio
                mBio
                mBio
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2150-7511
                12 July 2016
                Jul-Aug 2016
                : 7
                : 4
                : e00863-16
                Affiliations
                [1]Department of Biochemistry and Cell Biology, State University of New York, Stony Brook, New York, USA
                Author notes
                Address correspondence to Benoît Lacroix, benoit.lacroix@ 123456stonybrook.edu .

                Invited Editor Stephen Carlyle Winans, Cornell University Editor R. John Collier, Harvard Medical School

                Author information
                http://orcid.org/0000-0003-2024-6844
                Article
                mBio00863-16
                10.1128/mBio.00863-16
                4958254
                27406565
                3eb861dd-dc3b-4425-8922-aae862fbe158
                Copyright © 2016 Lacroix and Citovsky.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Page count
                supplementary-material: 9, Figures: 1, Tables: 0, Equations: 0, References: 85, Pages: 9, Words: 8254
                Funding
                Funded by: USDA National Institute of Food and Agriculture
                Award ID: 2013-02918
                Award Recipient : Vitaly Citovsky
                Funded by: NIH
                Award ID: 5RO1GM05022419
                Award Recipient : Vitaly Citovsky
                Funded by: BSF
                Award ID: 2011070
                Award Recipient : Vitaly Citovsky
                Funded by: NSF
                Award ID: MCB1118491
                Award Recipient : Vitaly Citovsky
                Funded by: BARD http://dx.doi.org/10.13039/501100001269
                Award ID: US460513C
                Award Recipient : Vitaly Citovsky
                Categories
                Minireview
                Custom metadata
                July/August 2016

                Life sciences
                Life sciences

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