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      Adaptive compounding speckle-noise-reduction filter for optical coherence tomography images

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          Abstract.

          Significance: Speckle noise limits the diagnostic capabilities of optical coherence tomography (OCT) images, causing both a reduction in contrast and a less accurate assessment of the microstructural morphology of the tissue.

          Aim: We present a speckle-noise reduction method for OCT volumes that exploits the advantages of adaptive-noise wavelet thresholding with a wavelet compounding method applied to several frames acquired from consecutive positions. The method takes advantage of the wavelet representation of the speckle statistics, calculated properly from a homogeneous sample or a region of the noisy volume.

          Approach: The proposed method was first compared quantitatively with different state-of-the-art approaches by being applied to three different clinical dermatological OCT volumes with three different OCT settings. The method was also applied to a public retinal spectral-domain OCT dataset to demonstrate its applicability to different imaging modalities.

          Results: The results based on four different metrics demonstrate that the proposed method achieved the best performance among the tested techniques in suppressing noise and preserving structural information.

          Conclusions: The proposed OCT denoising technique has the potential to adapt to different image OCT settings and noise environments and to improve image quality prior to clinical diagnosis based on visual assessment.

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          Most cited references58

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          Optical coherence tomography

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            Beyond a Gaussian Denoiser: Residual Learning of Deep CNN for Image Denoising.

            The discriminative model learning for image denoising has been recently attracting considerable attentions due to its favorable denoising performance. In this paper, we take one step forward by investigating the construction of feed-forward denoising convolutional neural networks (DnCNNs) to embrace the progress in very deep architecture, learning algorithm, and regularization method into image denoising. Specifically, residual learning and batch normalization are utilized to speed up the training process as well as boost the denoising performance. Different from the existing discriminative denoising models which usually train a specific model for additive white Gaussian noise at a certain noise level, our DnCNN model is able to handle Gaussian denoising with unknown noise level (i.e., blind Gaussian denoising). With the residual learning strategy, DnCNN implicitly removes the latent clean image in the hidden layers. This property motivates us to train a single DnCNN model to tackle with several general image denoising tasks, such as Gaussian denoising, single image super-resolution, and JPEG image deblocking. Our extensive experiments demonstrate that our DnCNN model can not only exhibit high effectiveness in several general image denoising tasks, but also be efficiently implemented by benefiting from GPU computing.
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              Intracoronary optical coherence tomography: a comprehensive review clinical and research applications.

              Cardiovascular optical coherence tomography (OCT) is a catheter-based invasive imaging system. Using light rather than ultrasound, OCT produces high-resolution in vivo images of coronary arteries and deployed stents. This comprehensive review will assist practicing interventional cardiologists in understanding the technical aspects of OCT based upon the physics of light and will also highlight the emerging research and clinical applications of OCT. Semi-automated imaging analyses of OCT systems permit accurate measurements of luminal architecture and provide insights regarding stent apposition, overlap, neointimal thickening, and, in the case of bioabsorbable stents, information regarding the time course of stent dissolution. The advantages and limitations of this new imaging modality will be discussed with emphasis on key physical and technical aspects of intracoronary image acquisition, current applications, definitions, pitfalls, and future directions.
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                Author and article information

                Contributors
                Journal
                J Biomed Opt
                J Biomed Opt
                JBOPFO
                JBO
                Journal of Biomedical Optics
                Society of Photo-Optical Instrumentation Engineers
                1083-3668
                1560-2281
                17 June 2021
                June 2021
                17 June 2021
                : 26
                : 6
                : 065001
                Affiliations
                [a ]Universidad Politécnica de Madrid , ETSI Telecomunicación, Biomedical Image Technologies Laboratory, Madrid, Spain
                [b ]Biomedical Research Center in Bioengineering, Biomaterials and Nanomedicine , Madrid, Spain
                [c ]Medical University of Vienna , Department of Dermatology, Vienna, Austria
                [d ]Medical University of Vienna , Center for Medical Physics and Biomedical Engineering, Vienna, Austria
                Author notes
                [* ]Address all correspondence to Juan J. Gómez-Valverde, juanjo.gomez@ 123456upm.es
                Author information
                https://orcid.org/0000-0002-5073-5908
                https://orcid.org/0000-0002-2268-5333
                https://orcid.org/0000-0001-7423-9135
                Article
                JBO-210051R 210051R
                10.1117/1.JBO.26.6.065001
                8211087
                3b3c01c2-f1dc-47f7-9f9f-335de9ee39fd
                © 2021 The Authors

                Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.

                History
                : 17 February 2021
                : 24 May 2021
                Page count
                Figures: 16, Tables: 10, References: 59, Pages: 24
                Funding
                Funded by: European Union FP7
                Award ID: 611132
                Funded by: Spanish Ministry Of Science, Innovation and Universities
                Award ID: TEC2015-66978-R
                Award ID: RTI2018-098682-B-I00
                Categories
                General
                Paper
                Custom metadata
                Gómez-Valverde et al.: Adaptive compounding speckle-noise-reduction filter…

                Biomedical engineering
                optical coherence tomography,denoising,image processing,speckle,wavelets
                Biomedical engineering
                optical coherence tomography, denoising, image processing, speckle, wavelets

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