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      The Multiple Faces of Disordered Nucleoporins

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          Abstract

          An evolutionary advantage of intrinsically disordered proteins (IDPs) is their ability to bind a variety of folded proteins—a paradigm that is central to the nucleocytoplasmic transport mechanism, in which nuclear transport receptors mediate the translocation of various cargo through the nuclear pore complex by binding disordered phenylalanine–glycine-rich nucleoporins (FG-Nups). FG-Nups are highly dynamic, which poses a substantial problem when trying to determine precisely their function using common experimental approaches. FG-Nups have been studied under a variety of conditions, ranging from those that constitute single-molecule measurements to physiological concentrations at which they can form supramolecular structures. In this review, I describe the physicochemical properties of FG-Nups and compare them to those of other disordered systems, including well-studied IDPs. From this comparison, it is apparent that FG-Nups not only share some properties with IDPs in general but also possess unique characteristics that might be key to their central role in the nucleocytoplasmic transport machinery.

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          A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

          Many proteins contain disordered regions of low-sequence complexity, which cause aging-associated diseases because they are prone to aggregate. Here, we study FUS, a prion-like protein containing intrinsically disordered domains associated with the neurodegenerative disease ALS. We show that, in cells, FUS forms liquid compartments at sites of DNA damage and in the cytoplasm upon stress. We confirm this by reconstituting liquid FUS compartments in vitro. Using an in vitro "aging" experiment, we demonstrate that liquid droplets of FUS protein convert with time from a liquid to an aggregated state, and this conversion is accelerated by patient-derived mutations. We conclude that the physiological role of FUS requires forming dynamic liquid-like compartments. We propose that liquid-like compartments carry the trade-off between functionality and risk of aggregation and that aberrant phase transitions within liquid-like compartments lie at the heart of ALS and, presumably, other age-related diseases.
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            Liquid-liquid phase separation in biology.

            Cells organize many of their biochemical reactions in non-membrane compartments. Recent evidence has shown that many of these compartments are liquids that form by phase separation from the cytoplasm. Here we discuss the basic physical concepts necessary to understand the consequences of liquid-like states for biological functions.
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              Germline P granules are liquid droplets that localize by controlled dissolution/condensation.

              In sexually reproducing organisms, embryos specify germ cells, which ultimately generate sperm and eggs. In Caenorhabditis elegans, the first germ cell is established when RNA and protein-rich P granules localize to the posterior of the one-cell embryo. Localization of P granules and their physical nature remain poorly understood. Here we show that P granules exhibit liquid-like behaviors, including fusion, dripping, and wetting, which we used to estimate their viscosity and surface tension. As with other liquids, P granules rapidly dissolved and condensed. Localization occurred by a biased increase in P granule condensation at the posterior. This process reflects a classic phase transition, in which polarity proteins vary the condensation point across the cell. Such phase transitions may represent a fundamental physicochemical mechanism for structuring the cytoplasm.
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                Author and article information

                Contributors
                Journal
                2985088R
                J Mol Biol
                J Mol Biol
                Journal of molecular biology
                0022-2836
                1089-8638
                14 September 2021
                22 May 2016
                11 January 2016
                21 September 2021
                : 428
                : 10 Pt A
                : 2011-24
                Affiliations
                Structural and Computational Biology Unit, Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
                Author notes
                Correspondence to Edward A. Lemke: lemke@ 123456embl.de

                Edited by R. W. Kriwacki

                Article
                EMS134949
                10.1016/j.jmb.2016.01.002
                7611686
                26791761
                3b1d07d4-55ce-4168-b3e1-7e76ce3336bf

                This is an open access article under the CC BY-NC-ND license ( https://creativecommons.org/licenses/by-nc-nd/4.0/).

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                Categories
                Article

                Molecular biology
                intrinsically disordered proteins,nucleocytoplasmic transport,protein folding and dynamics,phase separation,protein moonlighting

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