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      Voltage imaging and optogenetics reveal behavior dependent changes in hippocampal dynamics

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          Abstract

          A technology to record membrane potential from multiple neurons, simultaneously, in behaving animals will have a transformative impact on neuroscience research 1, 2 . Genetically encoded voltage indicators are a promising tool for these purposes, but were so far limited to single-cell recordings with marginal signal to noise ratio (SNR) in vivo 3- 5 . We developed improved near infrared voltage indicators, high speed microscopes and targeted gene expression schemes which enabled recordings of supra- and subthreshold voltage dynamics from multiple neurons simultaneously in mouse hippocampus, in vivo. The reporters revealed sub-cellular details of back-propagating action potentials and correlations in sub-threshold voltage between multiple cells. In combination with optogenetic stimulation, the reporters revealed brain state-dependent changes in neuronal excitability, reflecting the interplay of excitatory and inhibitory synaptic inputs. These tools open the possibility for detailed explorations of network dynamics in the context of behavior.

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          Most cited references32

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          Theta oscillations in the hippocampus.

          Theta oscillations represent the "on-line" state of the hippocampus. The extracellular currents underlying theta waves are generated mainly by the entorhinal input, CA3 (Schaffer) collaterals, and voltage-dependent Ca(2+) currents in pyramidal cell dendrites. The rhythm is believed to be critical for temporal coding/decoding of active neuronal ensembles and the modification of synaptic weights. Nevertheless, numerous critical issues regarding both the generation of theta oscillations and their functional significance remain challenges for future research.
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            Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.

            An increasingly powerful approach for studying brain circuits relies on targeting genetically encoded sensors and effectors to specific cell types. However, current approaches for this are still limited in functionality and specificity. Here we utilize several intersectional strategies to generate multiple transgenic mouse lines expressing high levels of novel genetic tools with high specificity. We developed driver and double reporter mouse lines and viral vectors using the Cre/Flp and Cre/Dre double recombinase systems and established a new, retargetable genomic locus, TIGRE, which allowed the generation of a large set of Cre/tTA-dependent reporter lines expressing fluorescent proteins, genetically encoded calcium, voltage, or glutamate indicators, and optogenetic effectors, all at substantially higher levels than before. High functionality was shown in example mouse lines for GCaMP6, YCX2.60, VSFP Butterfly 1.2, and Jaws. These novel transgenic lines greatly expand the ability to monitor and manipulate neuronal activities with increased specificity.
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              High-Performance Genetically Targetable Optical Neural Silencing via Light-Driven Proton Pumps

              The ability to silence the activity of genetically specified neurons in a temporally precise fashion would open up the ability to investigate the causal role of specific cell classes in neural computations, behaviors, and pathologies. Here we show that members of the class of light-driven outward proton pumps can mediate very powerful, safe, multiple-color silencing of neural activity. The gene archaerhodopsin-31 (Arch) from Halorubrum sodomense enables near-100% silencing of neurons in the awake brain when virally expressed in mouse cortex and illuminated with yellow light. Arch mediates currents of several hundred picoamps at low light powers, and supports neural silencing currents approaching 900 pA at light powers easily achievable in vivo. In addition, Arch spontaneously recovers from light-dependent inactivation, unlike light-driven chloride pumps that enter long-lasting inactive states in response to light. These properties of Arch are appropriate to mediate the optical silencing of significant brain volumes over behaviourally-relevant timescales. Arch function in neurons is well tolerated because pH excursions created by Arch illumination are minimized by self-limiting mechanisms to levels comparable to those mediated by channelrhodopsins2,3 or natural spike firing. To highlight how proton pump ecological and genomic diversity may support new innovation, we show that the blue-green light-drivable proton pump from the fungus Leptosphaeria maculans 4 (Mac) can, when expressed in neurons, enable neural silencing by blue light, thus enabling alongside other developed reagents the potential for independent silencing of two neural populations by blue vs. red light. Light-driven proton pumps thus represent a high-performance and extremely versatile class of “optogenetic” voltage and ion modulator, which will broadly empower new neuroscientific, biological, neurological, and psychiatric investigations.
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                Author and article information

                Journal
                0410462
                6011
                Nature
                Nature
                Nature
                0028-0836
                1476-4687
                25 February 2019
                01 May 2019
                May 2019
                01 November 2019
                : 569
                : 7756
                : 413-417
                Affiliations
                [1 ]Dept. of Chemistry and Chemical Biology, Harvard University
                [2 ]Dept. of Chemistry, University of Alberta
                [3 ]Dept. of Stem Cell and Regenerative Biology, Harvard University
                [4 ]Dept. of Neurobiology, Harvard Medical School
                [5 ]Allen Institute for Brain Science
                [6 ]Howard Hughes Medical Institute
                [7 ]Department of Statistics, Columbia University.
                Author notes
                [* ]Correspondence and requests for materials should be addressed to cohen@ 123456chemistry.harvard.edu

                Author Contributions

                Y.A. performed the patch clamp and imaging experiments in acute slices, cultured neurons and in vivo. J.J.K. performed patch clamp measurements in HEK cells. Y.A. and Y.Z. performed protein engineering, with supervision by A.E.C. and R.E.C. respectively. Y.A. and D.B. performed spectroscopy experiments. Y.A. developed the imaging system with help from H.W., J.J.K., S.K., and V.P.. S.L., L.M., and H.Z. developed and characterized the Ai155 Optopatch3 mice. M.M.R. performed IUE, supervised by P.A.. M.E.X. optimized and validated the PMD-NMF algorithm in collaboration with E.K.B., I.K., D.Z, and L.P.. S.C. and C.D.H. shared unpublished reagents for soma targeting of opsins. K.J.W. helped with molecular biology. B.G. preformed the heating simulation. S.L.F. designed the CheRiff-HA construct. Y.A. and A.E.C. designed the project, analyzed data and wrote the manuscript. A.E.C. supervised all aspects of the project.

                Article
                HHMIMS1521673
                10.1038/s41586-019-1166-7
                6613938
                31043747
                390f3dba-b329-4019-89ec-b7e8a354ee97

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