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      Broad phenotypic spectrum and genotype-phenotype correlations in GMPPB-related dystroglycanopathies: an Italian cross-sectional study

      research-article
      1 , , 2 , 3 , 4 , 5 , 1 , 6 , 7 , 8 , 9 , 1 , 10 , 8 , 11 , 12 , 4 , 13 , 1 , 4 , 1 , 1 , 14 , 15 , 16 , 14 , 1 , 17 , 16 , 18 , 19 , 11 , 16 , 18 , 20 , 1 , 21 , 21 , 22 , 16 , 18 , 8 , 1 , , the Italian CMD Network
      Orphanet Journal of Rare Diseases
      BioMed Central
      Congenital muscular dystrophy, Limb-girdle muscular dystrophy, GMPPB, Dystroglycanopathies, Genotype-phenotype correlations

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          Abstract

          Background

          Dystroglycanopathy (α-DG) is a relatively common, clinically and genetically heterogeneous category of congenital forms of muscular dystrophy (CMD) and limb-girdle muscular dystrophy (LGMD) associated with hypoglycosylated α-dystroglycan. To date, mutations in at least 19 genes have been associated with α-DG. One of them, GMPPB, encoding the guanosine-diphosphate-mannose (GDP-mannose) pyrophosphorylase B protein, has recently been associated with a wide clinical spectrum ranging from severe Walker-Warburg syndrome to pseudo-metabolic myopathy and even congenital myasthenic syndromes.

          We re-sequenced the full set of known disease genes in 73 Italian patients with evidence of either reduced or nearly absent α-dystroglycan to assess genotype-phenotype correlations in this cohort. We used innovative bioinformatic tools to calculate the effects of all described GMPPB mutations on protein function and attempted to correlate them with phenotypic expressions.

          Results

          We identified 13 additional cases from 12 families and defined seven novel mutations. Patients displayed variable phenotypes including less typical pictures, ranging from asymptomatic hyperCKemia, to arthrogryposis and congenital clubfoot at birth, and also showed neurodevelopmental comorbidities, such as seizures and ataxic gait, as well as autism-spectrum disorder, which is seldom described in clinical reports of dystroglycanopathies. We also demonstrated that few mutations recur in the Italian GMPPB-mutated population and that alterations of protein stability are the main effects of GMPPB missense variants.

          Conclusion

          This work adds to the data on genotype-phenotype correlations in α-DG and offers new bionformatic tools to provide the conceptual framework needed to understand the complexity of these disorders.

          Electronic supplementary material

          The online version of this article (10.1186/s13023-018-0863-x) contains supplementary material, which is available to authorized users.

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          Most cited references21

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          3Drefine: an interactive web server for efficient protein structure refinement

          3Drefine is an interactive web server for consistent and computationally efficient protein structure refinement with the capability to perform web-based statistical and visual analysis. The 3Drefine refinement protocol utilizes iterative optimization of hydrogen bonding network combined with atomic-level energy minimization on the optimized model using a composite physics and knowledge-based force fields for efficient protein structure refinement. The method has been extensively evaluated on blind CASP experiments as well as on large-scale and diverse benchmark datasets and exhibits consistent improvement over the initial structure in both global and local structural quality measures. The 3Drefine web server allows for convenient protein structure refinement through a text or file input submission, email notification, provided example submission and is freely available without any registration requirement. The server also provides comprehensive analysis of submissions through various energy and statistical feedback and interactive visualization of multiple refined models through the JSmol applet that is equipped with numerous protein model analysis tools. The web server has been extensively tested and used by many users. As a result, the 3Drefine web server conveniently provides a useful tool easily accessible to the community. The 3Drefine web server has been made publicly available at the URL: http://sysbio.rnet.missouri.edu/3Drefine/.
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            Refining genotype phenotype correlations in muscular dystrophies with defective glycosylation of dystroglycan.

            Muscular dystrophies with reduced glycosylation of alpha-dystroglycan (alpha-DG), commonly referred to as dystroglycanopathies, are a heterogeneous group of autosomal recessive conditions which include a wide spectrum of clinical severity. Reported phenotypes range from severe congenital onset Walker-Warburg syndrome (WWS) with severe structural brain and eye involvement, to relatively mild adult onset limb girdle muscular dystrophy (LGMD). Specific clinical syndromes were originally described in association with mutations in any one of six demonstrated or putative glycosyltransferases. Work performed on patients with mutations in the FKRP gene has identified that the spectrum of phenotypes due to mutations in this gene is much wider than originally assumed. To further define the mutation frequency and phenotypes associated with mutations in the other five genes, we studied a large cohort of patients with evidence of a dystroglycanopathy. Exclusion of mutations in FKRP was a prerequisite for participation in this study. Ninety-two probands were screened for mutations in POMT1, POMT2, POMGnT1, fukutin and LARGE. Homozygous and compound heterozygous mutations were detected in a total of 31 probands (34 individuals from 31 families); 37 different mutations were identified, of which 32 were novel. Mutations in POMT2 were the most prevalent in our cohort with nine cases, followed by POMT1 with eight cases, POMGnT1 with seven cases, fukutin with six cases and LARGE with only a single case. All patients with POMT1 and POMT2 mutations had evidence of either structural or functional central nervous system involvement including four patients with mental retardation and a LGMD phenotype. In contrast mutations in fukutin and POMGnT1 were detected in four patients with LGMD and no evidence of brain involvement. The majority of patients (six out of nine) with mutations in POMT2 had a Muscle-Eye-Brain (MEB)-like condition. In addition we identified a mutation in the gene LARGE in a patient with WWS. Our data expands the clinical phenotypes associated with POMT1, POMT2, POMGnT1, fukutin and LARGE mutations. Mutations in these five glycosyltransferase genes were detected in 34% of patients indicating that, after the exclusion of FKRP, the majority of patients with a dystroglycanopathy harbour mutations in novel genes.
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              Mutations in GDP-mannose pyrophosphorylase B cause congenital and limb-girdle muscular dystrophies associated with hypoglycosylation of α-dystroglycan.

              Congenital muscular dystrophies with hypoglycosylation of α-dystroglycan (α-DG) are a heterogeneous group of disorders often associated with brain and eye defects in addition to muscular dystrophy. Causative variants in 14 genes thought to be involved in the glycosylation of α-DG have been identified thus far. Allelic mutations in these genes might also cause milder limb-girdle muscular dystrophy phenotypes. Using a combination of exome and Sanger sequencing in eight unrelated individuals, we present evidence that mutations in guanosine diphosphate mannose (GDP-mannose) pyrophosphorylase B (GMPPB) can result in muscular dystrophy variants with hypoglycosylated α-DG. GMPPB catalyzes the formation of GDP-mannose from GTP and mannose-1-phosphate. GDP-mannose is required for O-mannosylation of proteins, including α-DG, and it is the substrate of cytosolic mannosyltransferases. We found reduced α-DG glycosylation in the muscle biopsies of affected individuals and in available fibroblasts. Overexpression of wild-type GMPPB in fibroblasts from an affected individual partially restored glycosylation of α-DG. Whereas wild-type GMPPB localized to the cytoplasm, five of the identified missense mutations caused formation of aggregates in the cytoplasm or near membrane protrusions. Additionally, knockdown of the GMPPB ortholog in zebrafish caused structural muscle defects with decreased motility, eye abnormalities, and reduced glycosylation of α-DG. Together, these data indicate that GMPPB mutations are responsible for congenital and limb-girdle muscular dystrophies with hypoglycosylation of α-DG. Copyright © 2013 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.
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                Author and article information

                Contributors
                gastrea@fsm.unipi.it
                romano.alessandro@hsr.it
                corrado.angelini@unipd.it
                carlo.antozzi@istituto-besta.it
                rita.barresi@ncl.ac.uk
                rbattini@fsm.unipi.it
                carla.battisti@unisi.it
                ebertini@gmail.com
                claudio2246@gmail.com
                dcassandrini@fsm.unipi.it
                marina.fanin@unipd.it
                fabianafattori79@gmail.com
                chi.fiorillo@gmail.com
                r.guerrini@meyer.it
                lorenzo.maggi@istituto-besta.it
                eumercuri@gmail.com
                fmorani@fsm.unipi.it
                marina.mora@istituto-besta.it
                fmoro@fsm.unipi.it
                ipezzini@fsm.unipi.it
                ester.picillo@unicampania.it
                michele.pinelli@gmail.com
                luisa.politano@unicampania.it
                arubegni@fsm.unipi.it
                wsanseverino@sequentiabiotech.com
                msavarese@tigem.it
                strianop@gmail.com
                annalaura.torella@gmail.com
                carlopietro.trevisan@unipd.it
                rtrovato@fsm.unipi.it
                i.zaharieva@ucl.ac.uk
                f.muntoni@ucl.ac.uk
                vinnigro@gmail.com
                adele2.damico@opbg.net
                filippo3364@gmail.com
                Journal
                Orphanet J Rare Dis
                Orphanet J Rare Dis
                Orphanet Journal of Rare Diseases
                BioMed Central (London )
                1750-1172
                26 September 2018
                26 September 2018
                2018
                : 13
                : 170
                Affiliations
                [1 ]ISNI 0000 0004 1757 9821, GRID grid.434251.5, Department of Developmental Neuroscience and Molecular Medicine Neuromuscular Unit and Child Neurology, , IRCCS Fondazione Stella Maris, ; Via dei Giacinti 2, 56018 Pisa, Italy
                [2 ]ISNI 0000000417581884, GRID grid.18887.3e, Neuropathology Unit, Institute of Experimental Neurology and Division of Neuroscience, , IRCCS San Raffaele Scientific Institute, ; Milan, Italy
                [3 ]Fondazione San Camillo Hospital IRCCS, Lido Venice, Italy
                [4 ]ISNI 0000 0001 0707 5492, GRID grid.417894.7, Department of Neuroimmunology and Neuromuscular Disorders, , Neurological Institute “C. Besta” IRCCS Foundation, ; Milan, Italy
                [5 ]ISNI 0000 0001 0462 7212, GRID grid.1006.7, Rare Diseases Advisory Group Service for Neuromuscular Diseases, Muscle Immunoanalysis Unit, Dental Hospital, and The John Walton Muscular Dystrophy Research Centre, MRC Centre for Neuromuscular Diseases Institute of Genetic Medicine, , University of Newcastle, ; Newcastle upon Tyne, UK
                [6 ]ISNI 0000 0004 1757 3729, GRID grid.5395.a, Department of Clinical and Experimental Medicine, , University of Pisa, ; Pisa, Italy
                [7 ]ISNI 0000 0004 1757 4641, GRID grid.9024.f, Department of Medical, Surgical and Neurosciences, , University of Siena, ; Siena, Italy
                [8 ]ISNI 0000 0001 0727 6809, GRID grid.414125.7, Unit of Neuromuscular and Neurodegenerative Disorders, Department of Neurosciences, , Bambino Gesù Children’s Hospital, ; Rome, Italy
                [9 ]ISNI 0000 0004 1760 0109, GRID grid.419504.d, Center of Myology and Neurodegenerative Disorders, , G. Gaslini Institute, ; Genoa, Italy
                [10 ]ISNI 0000 0004 1757 3470, GRID grid.5608.b, Neurological Science Department and Venetian Institute of Molecular Medicine, , University of Padua, ; Padua, Italy
                [11 ]Pediatric Neurology and Muscular Diseases Unit, Department of Neurosciences, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health, University of Genoa, “G. Gaslini” Institute, Genoa, Italy
                [12 ]ISNI 0000 0004 1757 8562, GRID grid.413181.e, Pediatric Neurology Unit and Laboratories, , Children’s Hospital A. Meyer-University of Florence, ; Florence, Italy
                [13 ]ISNI 0000 0001 0941 3192, GRID grid.8142.f, Pediatric Neurology Unit, Department of Women’s and Children’s Health, , Università Cattolica del Sacro Cuore, ; Rome, Italy
                [14 ]ISNI 0000 0001 2200 8888, GRID grid.9841.4, Cardiomyology and Genetic Section, Department of Internal and Experimental Medicine, , University of Campania “Luigi Vanvitelli”, ; Naples, Italy
                [15 ]ISNI 0000 0001 0790 385X, GRID grid.4691.a, Department of Translational Medicine, , Federico II University, ; Naples, Italy
                [16 ]ISNI 0000 0004 1758 1171, GRID grid.410439.b, Telethon Institute of Genetics and Medicine, ; Pozzuoli, Naples Italy
                [17 ]Sequentia Biotech SL, Barcelona, Spain
                [18 ]ISNI 0000 0001 2200 8888, GRID grid.9841.4, Dipartimento di Biochimica, Biofisica e Patologia Generale, , Università degli Studi della Campania “Luigi Vanvitelli”, ; Naples, Italy
                [19 ]ISNI 0000 0004 0410 2071, GRID grid.7737.4, Folkhälsan Institute of Genetics, Haartman Institute, , University of Helsinki, ; Helsinki, Finland
                [20 ]ISNI 0000 0004 1757 3470, GRID grid.5608.b, Department of Neurological and Psychiatric Sciences, , University of Padua, ; Padua, Italy
                [21 ]ISNI 0000000121901201, GRID grid.83440.3b, Dubowitz Neuromuscular Centre (F. Muntoni), , UCL Great Ormond Street Institute of Child Health, ; London, UK
                [22 ]ISNI 0000 0001 2116 3923, GRID grid.451056.3, NIHR Great Ormond Street Hospital Biomedical Research Centre, ; 30 Guilford Street, London, WC1N 1EH UK
                Article
                863
                10.1186/s13023-018-0863-x
                6158856
                30257713
                353fc609-a530-4cdf-9c83-e15afc19e994
                © The Author(s). 2018

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 8 March 2018
                : 29 June 2018
                Funding
                Funded by: Regione Toscana
                Award ID: FAS SALUTE 2014
                Funded by: FundRef http://dx.doi.org/10.13039/501100002426, Fondazione Telethon;
                Award ID: GUP13004
                Award Recipient :
                Categories
                Research
                Custom metadata
                © The Author(s) 2018

                Infectious disease & Microbiology
                congenital muscular dystrophy,limb-girdle muscular dystrophy,gmppb,dystroglycanopathies,genotype-phenotype correlations

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