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      Electrostatic Interaction with the Bacterial Cell Envelope Tunes the Lytic Activity of Two Novel Peptidoglycan Hydrolases

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          ABSTRACT

          Peptidoglycan (PG) hydrolases, due to their crucial role in the metabolism of the bacterial cell wall (CW), are increasingly being considered suitable targets for therapies, and a potent alternative to conventional antibiotics. In the light of contradictory data reported, detailed mechanism of regulation of enzymes activity based on electrostatic interactions between hydrolase molecule and bacterial CW surface remains unknown. Here, we report a comprehensive study on this phenomenon using as a model two novel PG hydrolases, SpM23_A, and SpM23_B, which although share the same bacterial host, similarities in sequence conservation, domain architecture, and structure, display surprisingly distinct net charges (in 2D electrophoresis, pI 6.8, and pI 9.7, respectively). We demonstrate a strong correlation between hydrolases surface net charge and the enzymes activity by modulating the charge of both, enzyme molecule and bacterial cell surface. Teichoic acids, anionic polymers present in the bacterial CW, are shown to be involved in the mechanism of enzymes activity regulation by the electrostatics-based interplay between charged bacterial envelope and PG hydrolases. These data serve as a hint for the future development of chimeric PG hydrolases of desired antimicrobial specificity.

          IMPORTANCE This study shows direct relationship between the surface charge of two recently described enzymes, SpM23_A and SpM23_B, and bacterial cell walls. We demonstrate that by (i) surface charge probing of bacterial strains collection, (ii) reduction of the net charge of the positively charged enzyme, and (iii) altering the net charge of the bacterial surface by modifying the content and composition of teichoic acids. In all cases, we observed that lytic activity and binding strength of SpM23 enzymes, are regulated by electrostatic interactions with the bacterial cell envelope and that this interaction contributes to the determination of the spectrum of susceptible bacterial species. Moreover, we revealed the regulatory role of charged cell wall components, namely, teichoic and lipoteichoic acids, over the SpM23 enzymes. We believe that our findings make an important contribution to understand the means of hydrolases activity regulation in the complex environment of the bacterial cell wall.

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          Most cited references75

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          SWISS-MODEL: homology modelling of protein structures and complexes

          Abstract Homology modelling has matured into an important technique in structural biology, significantly contributing to narrowing the gap between known protein sequences and experimentally determined structures. Fully automated workflows and servers simplify and streamline the homology modelling process, also allowing users without a specific computational expertise to generate reliable protein models and have easy access to modelling results, their visualization and interpretation. Here, we present an update to the SWISS-MODEL server, which pioneered the field of automated modelling 25 years ago and been continuously further developed. Recently, its functionality has been extended to the modelling of homo- and heteromeric complexes. Starting from the amino acid sequences of the interacting proteins, both the stoichiometry and the overall structure of the complex are inferred by homology modelling. Other major improvements include the implementation of a new modelling engine, ProMod3 and the introduction a new local model quality estimation method, QMEANDisCo. SWISS-MODEL is freely available at https://swissmodel.expasy.org.
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            Peptidoglycan structure and architecture.

            The peptidoglycan (murein) sacculus is a unique and essential structural element in the cell wall of most bacteria. Made of glycan strands cross-linked by short peptides, the sacculus forms a closed, bag-shaped structure surrounding the cytoplasmic membrane. There is a high diversity in the composition and sequence of the peptides in the peptidoglycan from different species. Furthermore, in several species examined, the fine structure of the peptidoglycan significantly varies with the growth conditions. Limited number of biophysical data on the thickness, elasticity and porosity of peptidoglycan are available. The different models for the architecture of peptidoglycan are discussed with respect to structural and physical parameters.
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              ExPASy: SIB bioinformatics resource portal

              ExPASy (http://www.expasy.org) has worldwide reputation as one of the main bioinformatics resources for proteomics. It has now evolved, becoming an extensible and integrative portal accessing many scientific resources, databases and software tools in different areas of life sciences. Scientists can henceforth access seamlessly a wide range of resources in many different domains, such as proteomics, genomics, phylogeny/evolution, systems biology, population genetics, transcriptomics, etc. The individual resources (databases, web-based and downloadable software tools) are hosted in a ‘decentralized’ way by different groups of the SIB Swiss Institute of Bioinformatics and partner institutions. Specifically, a single web portal provides a common entry point to a wide range of resources developed and operated by different SIB groups and external institutions. The portal features a search function across ‘selected’ resources. Additionally, the availability and usage of resources are monitored. The portal is aimed for both expert users and people who are not familiar with a specific domain in life sciences. The new web interface provides, in particular, visual guidance for newcomers to ExPASy.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                Microbiol Spectr
                Microbiol Spectr
                spectrum
                Microbiology Spectrum
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2165-0497
                25 April 2022
                May-Jun 2022
                25 April 2022
                : 10
                : 3
                : e00455-22
                Affiliations
                [a ] International Institute of Molecular and Cell Biologygrid.419362.b, in Warsaw, Warsaw, Poland
                [b ] Mossakowski Medical Research Institute Polish Academy of Sciences, Warsaw, Poland
                University of Manitoba
                Author notes

                The authors declare no conflict of interest.

                Author information
                https://orcid.org/0000-0002-1500-0391
                https://orcid.org/0000-0003-0925-8457
                https://orcid.org/0000-0002-5481-8671
                Article
                00455-22 spectrum.00455-22
                10.1128/spectrum.00455-22
                9241647
                35467396
                339ff512-e3cd-4b0d-9021-11c49316fbeb
                Copyright © 2022 Wysocka et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                : 4 February 2022
                : 4 April 2022
                Page count
                supplementary-material: 1, Figures: 8, Tables: 0, Equations: 0, References: 75, Pages: 22, Words: 13237
                Funding
                Funded by: Fundacja na rzecz Nauki Polskiej (FNP), FundRef https://doi.org/10.13039/501100001870;
                Award ID: POIR. 04.04.00-00-3D8D/16-00
                Award Recipient : Award Recipient : Award Recipient : Award Recipient :
                Funded by: Narodowe Centrum Nauki (NCN), FundRef https://doi.org/10.13039/501100004281;
                Award ID: 2017/01/X/NZ1/00512
                Award Recipient :
                Funded by: Narodowa Agencja Wymiany Akademickiej (NAWA), FundRef https://doi.org/10.13039/501100014434;
                Award ID: PPI/APM/2018/1/00034
                Award Recipient : Award Recipient : Award Recipient :
                Categories
                Research Article
                molecular-and-cellular-biology, Molecular and Cellular Biology
                Custom metadata
                May/June 2022

                peptidoglycan,hydrolase,electrostatics,staphylococcus aureus,cell wall,enzybiotics,net charge,staphylococcus

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