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      A549 cells contain enlarged mitochondria with independently functional clustered mtDNA nucleoids

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      PLoS ONE
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          Abstract

          Mitochondria are commonly viewed as highly elongated organelles with regularly spaced mtDNA genomes organized as compact nucleoids that generate the local transcripts essential for production of mitochondrial ribosomes and key components of the respiratory chain. In contrast, A549 human lung carcinoma cells frequently contain apparently swollen mitochondria harboring multiple discrete mtDNA nucleoids and RNA processing granules in a contiguous matrix compartment. While this seemingly aberrant mitochondrial morphology is akin to “mito-bulbs” previously described in cells exposed to a variety of genomic stressors, it occurs in A549 cells under typical culture conditions. We provide a detailed confocal and super-resolution microscopic investigation of the incidence of such mito-bulbs in A549 cells. Most mito-bulbs appear stable, engage in active replication and transcription, and maintain respiration but feature an elevated oxidative environment. High concentrations of glucose and/or L-glutamine in growth media promote a greater incidence of mito-bulbs. Furthermore, we demonstrate that treatment of A549 cells with TGFβ suppresses the formation of mito-bulbs while treatment with a specific TGFβ pathway inhibitor substantially increases incidence. This striking heterogeneity of mitochondrial form and function may play an important role in a variety of diseases involving mitochondrial dysfunction.

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          Most cited references73

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          Mechanisms of mitophagy.

          Autophagy not only recycles intracellular components to compensate for nutrient deprivation but also selectively eliminates organelles to regulate their number and maintain quality control. Mitophagy, the specific autophagic elimination of mitochondria, has been identified in yeast, mediated by autophagy-related 32 (Atg32), and in mammals during red blood cell differentiation, mediated by NIP3-like protein X (NIX; also known as BNIP3L). Moreover, mitophagy is regulated in many metazoan cell types by parkin and PTEN-induced putative kinase protein 1 (PINK1), and mutations in the genes encoding these proteins have been linked to forms of Parkinson's disease.
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            Fission and selective fusion govern mitochondrial segregation and elimination by autophagy.

            Accumulation of depolarized mitochondria within beta-cells has been associated with oxidative damage and development of diabetes. To determine the source and fate of depolarized mitochondria, individual mitochondria were photolabeled and tracked through fusion and fission. Mitochondria were found to go through frequent cycles of fusion and fission in a 'kiss and run' pattern. Fission events often generated uneven daughter units: one daughter exhibited increased membrane potential (delta psi(m)) and a high probability of subsequent fusion, while the other had decreased membrane potential and a reduced probability for a fusion event. Together, this pattern generated a subpopulation of non-fusing mitochondria that were found to have reduced delta psi(m) and decreased levels of the fusion protein OPA1. Inhibition of the fission machinery through DRP1(K38A) or FIS1 RNAi decreased mitochondrial autophagy and resulted in the accumulation of oxidized mitochondrial proteins, reduced respiration and impaired insulin secretion. Pulse chase and arrest of autophagy at the pre-proteolysis stage reveal that before autophagy mitochondria lose delta psi(m) and OPA1, and that overexpression of OPA1 decreases mitochondrial autophagy. Together, these findings suggest that fission followed by selective fusion segregates dysfunctional mitochondria and permits their removal by autophagy.
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              ER tubules mark sites of mitochondrial division.

              Mitochondrial structure and distribution are regulated by division and fusion events. Mitochondrial division is regulated by Dnm1/Drp1, a dynamin-related protein that forms helices around mitochondria to mediate fission. Little is known about what determines sites of mitochondrial fission within the mitochondrial network. The endoplasmic reticulum (ER) and mitochondria exhibit tightly coupled dynamics and have extensive contacts. We tested whether ER plays a role in mitochondrial division. We found that mitochondrial division occurred at positions where ER tubules contacted mitochondria and mediated constriction before Drp1 recruitment. Thus, ER tubules may play an active role in defining the position of mitochondrial division sites.
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                Author and article information

                Contributors
                Role: InvestigationRole: Writing – original draft
                Role: Formal analysisRole: SoftwareRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Funding acquisitionRole: InvestigationRole: Project administrationRole: SupervisionRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS One
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                25 March 2021
                2021
                : 16
                : 3
                : e0249047
                Affiliations
                [001]Department of Pharmacological Sciences, Stony Brook University, Stony Brook, NY, United States of America
                Imagine Institute, FRANCE
                Author notes

                Competing Interests: NO authors have competing interests.

                Author information
                https://orcid.org/0000-0001-7651-6669
                https://orcid.org/0000-0002-9993-2574
                Article
                PONE-D-20-38831
                10.1371/journal.pone.0249047
                7993880
                33765066
                3197199e-40ba-40ea-bfaa-1327fea57d00
                © 2021 Nasonovs et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 10 December 2020
                : 10 March 2021
                Page count
                Figures: 9, Tables: 3, Pages: 31
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100000057, National Institute of General Medical Sciences;
                Award ID: 1R01 GM112790-01A1
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000052, NIH Office of the Director;
                Award ID: 1S10OD016405-01
                Funded by: National Institutes of Health (US)
                Award ID: 1S10OD020096-01A1
                Funded by: funder-id http://dx.doi.org/10.13039/100000057, National Institute of General Medical Sciences;
                Award ID: T32 GM007518
                Award Recipient :
                This study was funded by the National Institutes of Health ( https://www.nih.gov/), 1R01 GM112790-01A1 to DFB; by NIH Office of the Director ( http://dx.doi.org/10.13039/100000052), 1S10OD016405-01; by the National Institutes of Health, 1S10OD020096-01A1; and by National Institute of General Medical Sciences http://dx.doi.org/10.13039/100000057, T32 GM007518 to MGD. The funders played no role in the study design, data collection or analysis, decision to publish or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Biochemistry
                Bioenergetics
                Energy-Producing Organelles
                Mitochondria
                Biology and Life Sciences
                Cell Biology
                Cellular Structures and Organelles
                Energy-Producing Organelles
                Mitochondria
                Biology and life sciences
                Genetics
                DNA
                Forms of DNA
                Mitochondrial DNA
                Biology and life sciences
                Biochemistry
                Nucleic acids
                DNA
                Forms of DNA
                Mitochondrial DNA
                Biology and Life Sciences
                Cell Biology
                Cellular Structures and Organelles
                Biology and Life Sciences
                Physiology
                Electrophysiology
                Membrane Potential
                Biology and life sciences
                Molecular biology
                Macromolecular structure analysis
                RNA structure
                Biology and life sciences
                Biochemistry
                Nucleic acids
                RNA
                RNA structure
                Physical Sciences
                Chemistry
                Chemical Compounds
                Organic Compounds
                Amino Acids
                Acidic Amino Acids
                Glutamine
                Physical Sciences
                Chemistry
                Organic Chemistry
                Organic Compounds
                Amino Acids
                Acidic Amino Acids
                Glutamine
                Biology and Life Sciences
                Biochemistry
                Proteins
                Amino Acids
                Acidic Amino Acids
                Glutamine
                Research and Analysis Methods
                Specimen Preparation and Treatment
                Staining
                Membrane Staining
                Physical Sciences
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                Chemical Compounds
                Organic Compounds
                Carbohydrates
                Monosaccharides
                Glucose
                Physical Sciences
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                Organic Chemistry
                Organic Compounds
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                Glucose
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