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      Automatic renal carcinoma biopsy guidance using forward-viewing endoscopic optical coherence tomography and deep learning

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          Abstract

          Percutaneous renal biopsy is commonly used for kidney cancer diagnosis. However, the biopsy procedure remains challenging in sampling accuracy. Here we introduce a forward-viewing optical coherence tomography probe for differentiating tumor and normal tissues, aiming at precise biopsy guidance. Totally, ten human kidney samples, nine of which had malignant renal carcinoma and one had benign oncocytoma, were used for system evaluation. Based on their distinct imaging features, carcinoma could be efficiently distinguished from normal renal tissues. Additionally, oncocytoma could be differentiated from carcinoma. We developed convolutional neural networks for tissue recognition. Compared to the conventional attenuation coefficient method, convolutional neural network models provided more accurate carcinoma predictions. These models reached a tissue recognition accuracy of 99.1% on a hold-out set of four kidney samples. Furthermore, they could efficiently distinguish oncocytoma from carcinoma. In conclusion, our convolutional neural network-aided endoscopic imaging platform could enhance carcinoma diagnosis during percutaneous renal biopsy procedures.

          Abstract

          Chen Wang and colleagues develop a forward-viewing optical coherence tomography endoscope for differentiating tumor tissues in renal biopsy. In conjunction with a convolutional neural network developed by the team, tissue recognition rates of over 99% were achieved.

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          Most cited references37

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          Cancer incidence and mortality patterns in Europe: Estimates for 40 countries and 25 major cancers in 2018

          Europe contains 9% of the world population but has a 25% share of the global cancer burden. Up-to-date cancer statistics in Europe are key to cancer planning. Cancer incidence and mortality estimates for 25 major cancers are presented for the 40 countries in the four United Nations-defined areas of Europe and for Europe and the European Union (EU-28) for 2018.
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            Grad-CAM: Visual Explanations from Deep Networks via Gradient-Based Localization

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              Optical coherence tomography

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                Author and article information

                Contributors
                cpan@ou.edu
                qtang@ou.edu
                Journal
                Commun Eng
                Commun Eng
                Communications Engineering
                Nature Publishing Group UK (London )
                2731-3395
                2 August 2024
                2 August 2024
                2024
                : 3
                : 107
                Affiliations
                [1 ]Stephenson School of Biomedical Engineering, University of Oklahoma, ( https://ror.org/02aqsxs83) Norman, OK USA
                [2 ]School of Computer Science, University of Oklahoma, ( https://ror.org/02aqsxs83) Norman, OK USA
                [3 ]Department of Pathology, University of Oklahoma Health Sciences Center, ( https://ror.org/0457zbj98) Oklahoma City, OK USA
                [4 ]GRID grid.266902.9, ISNI 0000 0001 2179 3618, Stephenson Cancer Center, , University of Oklahoma Health Sciences Center, ; Oklahoma City, OK USA
                [5 ]Deparment of Urology, University of Oklahoma Health Sciences Center, ( https://ror.org/0457zbj98) Oklahoma City, OK USA
                [6 ]GRID grid.266902.9, ISNI 0000 0001 2179 3618, Children’s Hospital, , University of Oklahoma Health Sciences Center, ; Oklahoma City, OK USA
                [7 ]Department of Radiological Sciences, University of Oklahoma Health Sciences Center, ( https://ror.org/0457zbj98) Oklahoma City, OK USA
                [8 ]Department of Surgery, University of Oklahoma Health Sciences Center, ( https://ror.org/0457zbj98) Oklahoma City, OK USA
                Author information
                http://orcid.org/0000-0003-4645-3227
                http://orcid.org/0009-0000-1849-4481
                http://orcid.org/0000-0001-9499-5384
                Article
                254
                10.1038/s44172-024-00254-9
                11297278
                39095532
                3139bb99-ecd0-4b96-be80-db9d072cf745
                © The Author(s) 2024

                Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

                History
                : 10 November 2023
                : 22 July 2024
                Funding
                Funded by: This work was supported by grants from the University of Oklahoma Health Sciences Center (3P30CA225520), Institutional Research Grant number IRG-19-142-01 from the American Cancer Society, National Science Foundation (OIA-2132161, 2238648), National Institute of Health (R01DK133717), Oklahoma Shared Clinical and Translational Resources (NIGMS U54GM104938), Oklahoma Center for the Advancement of Science and Technology (HR23-071), the medical imaging COBRE (P20 GM135009), and the Midwest Biomedical Accelerator Consortium (MBArC), an NIH Research Evaluation and Commercialization Hub (REACH). Histology service provided by the Tissue Pathology Shared Resource was supported in part by the National Institute of General Medical Sciences COBRE Grant P20GM103639 and National Cancer Institute Grant P30CA225520 of the National Institutes of Health. Financial support was provided by the OU Libraries’ Open Access Fund.
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                © Springer Nature Limited 2024

                biomedical engineering,imaging and sensing,computer science

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