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      BACON: A tool for reverse inference in brain activation and alteration

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          Abstract

          Over the past decades, powerful MRI‐based methods have been developed, which yield both voxel‐based maps of the brain activity and anatomical variation related to different conditions. With regard to functional or structural MRI data, forward inferences try to determine which areas are involved given a mental function or a brain disorder. A major drawback of forward inference is its lack of specificity, as it suggests the involvement of brain areas that are not specific for the process/condition under investigation. Therefore, a different approach is needed to determine to what extent a given pattern of cerebral activation or alteration is specifically associated with a mental function or brain pathology. In this study, we present a new tool called BACON (Bayes fACtor mOdeliNg) for performing reverse inference both with functional and structural neuroimaging data. BACON implements the Bayes' factor and uses the activation likelihood estimation derived‐maps to obtain posterior probability distributions on the evidence of specificity with regard to a particular mental function or brain pathology.

          Abstract

          We present a new tool called BACON (Bayes fACtor mOdeliNg) for performing reverse inference both with functional and structural neuroimaging data. BACON implements the Bayes' factor and uses the activation likelihood estimation derived‐maps to obtain posterior probability distributions on the evidence of specificity with regard to a particular mental function or brain pathology.

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          Most cited references39

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          Voxel-based morphometry--the methods.

          At its simplest, voxel-based morphometry (VBM) involves a voxel-wise comparison of the local concentration of gray matter between two groups of subjects. The procedure is relatively straightforward and involves spatially normalizing high-resolution images from all the subjects in the study into the same stereotactic space. This is followed by segmenting the gray matter from the spatially normalized images and smoothing the gray-matter segments. Voxel-wise parametric statistical tests which compare the smoothed gray-matter images from the two groups are performed. Corrections for multiple comparisons are made using the theory of Gaussian random fields. This paper describes the steps involved in VBM, with particular emphasis on segmenting gray matter from MR images with nonuniformity artifact. We provide evaluations of the assumptions that underpin the method, including the accuracy of the segmentation and the assumptions made about the statistical distribution of the data. Copyright 2000 Academic Press.
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            Large-scale automated synthesis of human functional neuroimaging data

            The explosive growth of the human neuroimaging literature has led to major advances in understanding of human brain function, but has also made aggregation and synthesis of neuroimaging findings increasingly difficult. Here we describe and validate an automated brain mapping framework that uses text mining, meta-analysis and machine learning techniques to generate a large database of mappings between neural and cognitive states. We demonstrate the capacity of our approach to automatically conduct large-scale, high-quality neuroimaging meta-analyses, address long-standing inferential problems in the neuroimaging literature, and support accurate ‘decoding’ of broad cognitive states from brain activity in both entire studies and individual human subjects. Collectively, our results validate a powerful and generative framework for synthesizing human neuroimaging data on an unprecedented scale.
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              Coordinate-based activation likelihood estimation meta-analysis of neuroimaging data: a random-effects approach based on empirical estimates of spatial uncertainty.

              A widely used technique for coordinate-based meta-analyses of neuroimaging data is activation likelihood estimation (ALE). ALE assesses the overlap between foci based on modeling them as probability distributions centered at the respective coordinates. In this Human Brain Project/Neuroinformatics research, the authors present a revised ALE algorithm addressing drawbacks associated with former implementations. The first change pertains to the size of the probability distributions, which had to be specified by the used. To provide a more principled solution, the authors analyzed fMRI data of 21 subjects, each normalized into MNI space using nine different approaches. This analysis provided quantitative estimates of between-subject and between-template variability for 16 functionally defined regions, which were then used to explicitly model the spatial uncertainty associated with each reported coordinate. Secondly, instead of testing for an above-chance clustering between foci, the revised algorithm assesses above-chance clustering between experiments. The spatial relationship between foci in a given experiment is now assumed to be fixed and ALE results are assessed against a null-distribution of random spatial association between experiments. Critically, this modification entails a change from fixed- to random-effects inference in ALE analysis allowing generalization of the results to the entire population of studies analyzed. By comparative analysis of real and simulated data, the authors showed that the revised ALE-algorithm overcomes conceptual problems of former meta-analyses and increases the specificity of the ensuing results without loosing the sensitivity of the original approach. It may thus provide a methodologically improved tool for coordinate-based meta-analyses on functional imaging data. 2009 Wiley-Liss, Inc.
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                Author and article information

                Contributors
                tommaso.costa@unito.it
                Journal
                Hum Brain Mapp
                Hum Brain Mapp
                10.1002/(ISSN)1097-0193
                HBM
                Human Brain Mapping
                John Wiley & Sons, Inc. (Hoboken, USA )
                1065-9471
                1097-0193
                15 May 2021
                1 August 2021
                : 42
                : 11 ( doiID: 10.1002/hbm.v42.11 )
                : 3343-3351
                Affiliations
                [ 1 ] GCS‐fMRI, Koelliker Hospital and Department of Psychology University of Turin Turin Italy
                [ 2 ] Department of Psychology University of Turin Turin Italy
                [ 3 ] FOCUS Laboratory, Department of Psychology University of Turin Turin Italy
                [ 4 ] Department of Physics University of Turin Turin Italy
                [ 5 ] Research Imaging Institute, University of Texas Health Science Center San Antonio Texas USA
                [ 6 ] South Texas Veterans Health Care System San Antonio Texas USA
                Author notes
                [*] [* ] Correspondence

                Tommaso Costa, GCS‐fMRI, Koelliker Hospital and Department of Psychology, University of Turin, Via Verdi 10, 10124, Turin, Italy.

                Email: tommaso.costa@ 123456unito.it

                Author information
                https://orcid.org/0000-0002-0822-862X
                https://orcid.org/0000-0002-9928-0924
                https://orcid.org/0000-0002-9481-8510
                https://orcid.org/0000-0003-0753-5537
                https://orcid.org/0000-0002-0465-2028
                https://orcid.org/0000-0003-1526-8475
                Article
                HBM25452
                10.1002/hbm.25452
                8249901
                33991154
                3051eff2-875b-4f22-9550-7e199428b2a2
                © 2021 The Authors. Human Brain Mapping published by Wiley Periodicals LLC.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.

                History
                : 03 February 2021
                : 15 October 2020
                : 10 April 2021
                Page count
                Figures: 7, Tables: 0, Pages: 9, Words: 6198
                Funding
                Funded by: Fondazione Carlo Molo
                Award ID: none
                Categories
                Technical Report
                Technical Report
                Custom metadata
                2.0
                August 1, 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.0.2 mode:remove_FC converted:02.07.2021

                Neurology
                activation likelihood estimation,bayes' factor,coordinate‐based meta‐analysis,fmri,reverse inference,voxel‐based morphometry

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