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ABSTRACT
The global health crisis and economic tolls of COVID-19 necessitate a panoply of strategies
to treat SARS-CoV-2 infection. To date, few treatment options exist, although neutralizing
antibodies against the spike glycoprotein have proven to be effective. Because infection
is initiated at the mucosa and propagates mainly at this site throughout the course
of the disease, blocking the virus at the mucosal milieu should be effective. However,
administration of biologics to the mucosa presents a substantial challenge. Here,
we describe bifunctional molecules combining single-domain variable regions that bind
to the polymeric Ig receptor (pIgR) and to the SARS-CoV-2 spike protein via addition
of the ACE2 extracellular domain (ECD). The hypothesis behind this design is that
pIgR will transport the molecule from the circulation to the mucosal surface where
the ACE ECD would act as a decoy receptor for the nCoV2. The bifunctional molecules
bind SARS-Cov-2 spike glycoprotein in vitro and efficiently transcytose across the
lung epithelium in human tissue-based analyses. Designs featuring ACE2 tethered to
the C-terminus of the Fc do not induce antibody-dependent cytotoxicity against pIgR-expressing
cells. These molecules thus represent a potential therapeutic modality for systemic
administration of neutralizing anti-SARS-CoV-2 molecules to the mucosa.
In December, 2019, a local outbreak of pneumonia of initially unknown cause was detected in Wuhan (Hubei, China), and was quickly determined to be caused by a novel coronavirus, 1 namely severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The outbreak has since spread to every province of mainland China as well as 27 other countries and regions, with more than 70 000 confirmed cases as of Feb 17, 2020. 2 In response to this ongoing public health emergency, we developed an online interactive dashboard, hosted by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University, Baltimore, MD, USA, to visualise and track reported cases of coronavirus disease 2019 (COVID-19) in real time. The dashboard, first shared publicly on Jan 22, illustrates the location and number of confirmed COVID-19 cases, deaths, and recoveries for all affected countries. It was developed to provide researchers, public health authorities, and the general public with a user-friendly tool to track the outbreak as it unfolds. All data collected and displayed are made freely available, initially through Google Sheets and now through a GitHub repository, along with the feature layers of the dashboard, which are now included in the Esri Living Atlas. The dashboard reports cases at the province level in China; at the city level in the USA, Australia, and Canada; and at the country level otherwise. During Jan 22–31, all data collection and processing were done manually, and updates were typically done twice a day, morning and night (US Eastern Time). As the outbreak evolved, the manual reporting process became unsustainable; therefore, on Feb 1, we adopted a semi-automated living data stream strategy. Our primary data source is DXY, an online platform run by members of the Chinese medical community, which aggregates local media and government reports to provide cumulative totals of COVID-19 cases in near real time at the province level in China and at the country level otherwise. Every 15 min, the cumulative case counts are updated from DXY for all provinces in China and for other affected countries and regions. For countries and regions outside mainland China (including Hong Kong, Macau, and Taiwan), we found DXY cumulative case counts to frequently lag behind other sources; we therefore manually update these case numbers throughout the day when new cases are identified. To identify new cases, we monitor various Twitter feeds, online news services, and direct communication sent through the dashboard. Before manually updating the dashboard, we confirm the case numbers with regional and local health departments, including the respective centres for disease control and prevention (CDC) of China, Taiwan, and Europe, the Hong Kong Department of Health, the Macau Government, and WHO, as well as city-level and state-level health authorities. For city-level case reports in the USA, Australia, and Canada, which we began reporting on Feb 1, we rely on the US CDC, the government of Canada, the Australian Government Department of Health, and various state or territory health authorities. All manual updates (for countries and regions outside mainland China) are coordinated by a team at Johns Hopkins University. The case data reported on the dashboard aligns with the daily Chinese CDC 3 and WHO situation reports 2 for within and outside of mainland China, respectively (figure ). Furthermore, the dashboard is particularly effective at capturing the timing of the first reported case of COVID-19 in new countries or regions (appendix). With the exception of Australia, Hong Kong, and Italy, the CSSE at Johns Hopkins University has reported newly infected countries ahead of WHO, with Hong Kong and Italy reported within hours of the corresponding WHO situation report. Figure Comparison of COVID-19 case reporting from different sources Daily cumulative case numbers (starting Jan 22, 2020) reported by the Johns Hopkins University Center for Systems Science and Engineering (CSSE), WHO situation reports, and the Chinese Center for Disease Control and Prevention (Chinese CDC) for within (A) and outside (B) mainland China. Given the popularity and impact of the dashboard to date, we plan to continue hosting and managing the tool throughout the entirety of the COVID-19 outbreak and to build out its capabilities to establish a standing tool to monitor and report on future outbreaks. We believe our efforts are crucial to help inform modelling efforts and control measures during the earliest stages of the outbreak.
Summary The emergence of SARS-CoV-2 has resulted in >90,000 infections and >3,000 deaths. Coronavirus spike (S) glycoproteins promote entry into cells and are the main target of antibodies. We show that SARS-CoV-2 S uses ACE2 to enter cells and that the receptor-binding domains of SARS-CoV-2 S and SARS-CoV S bind with similar affinities to human ACE2, correlating with the efficient spread of SARS-CoV-2 among humans. We found that the SARS-CoV-2 S glycoprotein harbors a furin cleavage site at the boundary between the S1/S2 subunits, which is processed during biogenesis and sets this virus apart from SARS-CoV and SARS-related CoVs. We determined cryo-EM structures of the SARS-CoV-2 S ectodomain trimer, providing a blueprint for the design of vaccines and inhibitors of viral entry. Finally, we demonstrate that SARS-CoV S murine polyclonal antibodies potently inhibited SARS-CoV-2 S mediated entry into cells, indicating that cross-neutralizing antibodies targeting conserved S epitopes can be elicited upon vaccination.
Publication date
(Electronic, pub):
25
October
2021
Publication date
(Electronic, collection):
2021
Publication date PMC-release: 25
October
2021
Volume: 13
Issue: 1
Electronic Location Identifier: 1987180
Affiliations
[a
]Janssen Biotherapeutics, Janssen R&D LLC; , Spring House, PA, USA
[b
]Active Pharmaceutical Ingredient Development, Janssen R&D LLC; , Spring House, PA, USA
[c
]Biologics Discovery, Alector, Inc; ., South San Francisco, CA, USA
Author notes
CONTACT Adam Zwolak
azwolak1@
123456its.jnj.com
Janssen Biotherapeutics, Janssen R&D LLC; , Spring House, 1400 McKean Road, Spring
House, PA 19477, USA
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