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      Insight into chemical basis of traditional Chinese medicine based on the state-of-the-art techniques of liquid chromatography−mass spectrometry

      review-article
      a , b , , a , , a , b ,
      Acta Pharmaceutica Sinica. B
      Elsevier
      Liquid chromatography−mass spectrometry, Qualitative analysis, Traditional Chinese medicine, Data acquisition, Data post-processing, BS, background subtraction, CCS, collision cross section, CE, collision energy, CID, collision-induced dissociation, cMRM, conventional multiple reaction monitoring, DDA, data-dependent acquisition, DE, dynamic exclusion, DIA, data-independent acquisition, DIF, diagnostic ion filtering, DM, database matching, EL, exclusion list, EMS, enhanced mass spectrum, EPI, enhanced product ion, FS, full scan, HCD, high-energy C-trap dissociation, IDA, information dependent acquisition, IM, ion mobility, IPF, isotope pattern filtering, ISCID, in-source collision-induced dissociation, LC, liquid chromatography, LTQ-Orbitrap, linear ion-trap/orbitrap, MDF, mass defect filtering, MIM, multiple ion monitoring, MN, molecular networking, MRM, multiple reaction monitoring, MS, mass spectrometry, MTSF, mass spectral trees similarity filter, NL, neutral loss, NLF, neutral loss filtering, NLS, neutral loss scan, NRF, nitrogen rule filtering, PCA, principal component analysis, PIL, precursor ion list, PIS, precursor ion scan, PLS-DA, partial least square-discriminant analysis, QqQ, triple quadrupole, QSRR, quantitative structure retention relationship, Q-TRAP, hybrid triple quadrupole-linear ion trap, RT, retention time, SA, statistical analysis, sMRM, scheduled multiple reaction monitoring, TCM, traditional Chinese medicine, UHPLC, ultra-high performance liquid chromatography

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          Abstract

          Traditional Chinese medicine (TCM) has been an indispensable source of drugs for curing various human diseases. However, the inherent chemical diversity and complexity of TCM restricted the safety and efficacy of its usage. Over the past few decades, the combination of liquid chromatography with mass spectrometry has contributed greatly to the TCM qualitative analysis. And novel approaches have been continuously introduced to improve the analytical performance, including both the data acquisition methods to generate a large and informative dataset, and the data post-processing tools to extract the structure-related MS information. Furthermore, the fast-developing computer techniques and big data analytics have markedly enriched the data processing tools, bringing benefits of high efficiency and accuracy. To provide an up-to-date review of the latest techniques on the TCM qualitative analysis, multiple data-independent acquisition methods and data-dependent acquisition methods (precursor ion list, dynamic exclusion, mass tag, precursor ion scan, neutral loss scan, and multiple reaction monitoring) and post-processing techniques (mass defect filtering, diagnostic ion filtering, neutral loss filtering, mass spectral trees similarity filter, molecular networking, statistical analysis, database matching, etc.) were summarized and categorized. Applications of each technique and integrated analytical strategies were highlighted, discussion and future perspectives were proposed as well.

          Graphical abstract

          This review summarized the mechanisms and applications of various data acquisition and data post-processing techniques of liquid chromatography−mass spectrometry (LC−MS) in qualitative analysis of traditional Chinese medicine (TCM).

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                Author and article information

                Contributors
                Journal
                Acta Pharm Sin B
                Acta Pharm Sin B
                Acta Pharmaceutica Sinica. B
                Elsevier
                2211-3835
                2211-3843
                26 February 2021
                June 2021
                26 February 2021
                : 11
                : 6
                : 1469-1492
                Affiliations
                [a ]Shanghai Research Center for Modernization of Traditional Chinese Medicine, National Engineering Laboratory for TCM Standardization Technology, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China
                [b ]University of Chinese Academy of Sciences, Beijing 100049, China
                Author notes
                []Corresponding author. Tel.: +86 21 20231000 2211; fax: +86 21 50272789. daguo@ 123456simm.ac.cn
                [†]

                These authors made equal contributions to this work.

                Article
                S2211-3835(21)00065-4
                10.1016/j.apsb.2021.02.017
                8245813
                34221863
                2ec882d8-5827-413b-8b94-66ccb44f5ac2
                © 2021 Chinese Pharmaceutical Association and Institute of Materia Medica, Chinese Academy of Medical Sciences. Production and hosting by Elsevier B.V.

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 7 December 2020
                : 2 February 2021
                : 22 February 2021
                Categories
                Review

                liquid chromatography−mass spectrometry,qualitative analysis,traditional chinese medicine,data acquisition,data post-processing,bs, background subtraction,ccs, collision cross section,ce, collision energy,cid, collision-induced dissociation,cmrm, conventional multiple reaction monitoring,dda, data-dependent acquisition,de, dynamic exclusion,dia, data-independent acquisition,dif, diagnostic ion filtering,dm, database matching,el, exclusion list,ems, enhanced mass spectrum,epi, enhanced product ion,fs, full scan,hcd, high-energy c-trap dissociation,ida, information dependent acquisition,im, ion mobility,ipf, isotope pattern filtering,iscid, in-source collision-induced dissociation,lc, liquid chromatography,ltq-orbitrap, linear ion-trap/orbitrap,mdf, mass defect filtering,mim, multiple ion monitoring,mn, molecular networking,mrm, multiple reaction monitoring,ms, mass spectrometry,mtsf, mass spectral trees similarity filter,nl, neutral loss,nlf, neutral loss filtering,nls, neutral loss scan,nrf, nitrogen rule filtering,pca, principal component analysis,pil, precursor ion list,pis, precursor ion scan,pls-da, partial least square-discriminant analysis,qqq, triple quadrupole,qsrr, quantitative structure retention relationship,q-trap, hybrid triple quadrupole-linear ion trap,rt, retention time,sa, statistical analysis,smrm, scheduled multiple reaction monitoring,tcm, traditional chinese medicine,uhplc, ultra-high performance liquid chromatography
                liquid chromatography−mass spectrometry, qualitative analysis, traditional chinese medicine, data acquisition, data post-processing, bs, background subtraction, ccs, collision cross section, ce, collision energy, cid, collision-induced dissociation, cmrm, conventional multiple reaction monitoring, dda, data-dependent acquisition, de, dynamic exclusion, dia, data-independent acquisition, dif, diagnostic ion filtering, dm, database matching, el, exclusion list, ems, enhanced mass spectrum, epi, enhanced product ion, fs, full scan, hcd, high-energy c-trap dissociation, ida, information dependent acquisition, im, ion mobility, ipf, isotope pattern filtering, iscid, in-source collision-induced dissociation, lc, liquid chromatography, ltq-orbitrap, linear ion-trap/orbitrap, mdf, mass defect filtering, mim, multiple ion monitoring, mn, molecular networking, mrm, multiple reaction monitoring, ms, mass spectrometry, mtsf, mass spectral trees similarity filter, nl, neutral loss, nlf, neutral loss filtering, nls, neutral loss scan, nrf, nitrogen rule filtering, pca, principal component analysis, pil, precursor ion list, pis, precursor ion scan, pls-da, partial least square-discriminant analysis, qqq, triple quadrupole, qsrr, quantitative structure retention relationship, q-trap, hybrid triple quadrupole-linear ion trap, rt, retention time, sa, statistical analysis, smrm, scheduled multiple reaction monitoring, tcm, traditional chinese medicine, uhplc, ultra-high performance liquid chromatography

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