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      Remodeling of maternal mRNA through poly(A) tail orchestrates human oocyte-to-embryo transition

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          Abstract

          Poly(A)-tail-mediated post-transcriptional regulation of maternal mRNAs is vital in the oocyte-to-embryo transition (OET). Nothing is known about poly(A) tail dynamics during the human OET. Here, we show that poly(A) tail length and internal non-A residues are highly dynamic during the human OET, using poly(A)-inclusive RNA isoform sequencing (PAIso-seq). Unexpectedly, maternal mRNAs undergo global remodeling: after deadenylation or partial degradation into 3ʹ-UTRs, they are re-polyadenylated to produce polyadenylated degradation intermediates, coinciding with massive incorporation of non-A residues, particularly internal long consecutive U residues, into the newly synthesized poly(A) tails. Moreover, TUT4 and TUT7 contribute to the incorporation of these U residues, BTG4-mediated deadenylation produces substrates for maternal mRNA re-polyadenylation, and TENT4A and TENT4B incorporate internal G residues. The maternal mRNA remodeling is further confirmed using PAIso-seq2. Importantly, maternal mRNA remodeling is essential for the first cleavage of human embryos. Together, these findings broaden our understanding of the post-transcriptional regulation of maternal mRNAs during the human OET.

          Abstract

          Comprehensive poly(A)-inclusive RNA isoform sequencing throughout the human oocyte and preimplantation embryo development reveals poly(A)-tail-mediated maternal mRNA remodeling that is essential for human embryo development.

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            Recent advances in sequencing technologies promise ultra-long reads of ∼100 kb in average, full-length mRNA or cDNA reads in high throughput and genomic contigs over 100 Mb in length. Existing alignment programs are unable or inefficient to process such data at scale, which presses for the development of new alignment algorithms.
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              Multiplex genome engineering using CRISPR/Cas systems.

              Functional elucidation of causal genetic variants and elements requires precise genome editing technologies. The type II prokaryotic CRISPR (clustered regularly interspaced short palindromic repeats)/Cas adaptive immune system has been shown to facilitate RNA-guided site-specific DNA cleavage. We engineered two different type II CRISPR/Cas systems and demonstrate that Cas9 nucleases can be directed by short RNAs to induce precise cleavage at endogenous genomic loci in human and mouse cells. Cas9 can also be converted into a nicking enzyme to facilitate homology-directed repair with minimal mutagenic activity. Lastly, multiple guide sequences can be encoded into a single CRISPR array to enable simultaneous editing of several sites within the mammalian genome, demonstrating easy programmability and wide applicability of the RNA-guided nuclease technology.
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                Author and article information

                Contributors
                wangjiaqiang@neau.edu.cn
                zhoubing@ioz.ac.cn
                wukeliang_527@163.com
                fllu@genetics.ac.cn
                Journal
                Nat Struct Mol Biol
                Nat Struct Mol Biol
                Nature Structural & Molecular Biology
                Nature Publishing Group US (New York )
                1545-9993
                1545-9985
                16 January 2023
                16 January 2023
                2023
                : 30
                : 2
                : 200-215
                Affiliations
                [1 ]GRID grid.412246.7, ISNI 0000 0004 1789 9091, College of Life Science, , Northeast Forestry University, ; Harbin, China
                [2 ]GRID grid.418558.5, ISNI 0000 0004 0596 2989, State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese Academy of Sciences, ; Beijing, China
                [3 ]GRID grid.27255.37, ISNI 0000 0004 1761 1174, Center for Reproductive Medicine, , Shandong University, The Key laboratory of Reproductive Endocrinology, Ministry of Education, Shandong University, ; Jinan, China
                [4 ]GRID grid.458458.0, ISNI 0000 0004 1792 6416, State Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Chinese Academy of Sciences, ; Beijing, China
                [5 ]GRID grid.59053.3a, ISNI 0000000121679639, Division of Life Sciences and Medicine, , University of Science and Technology of China, ; Hefei, China
                [6 ]GRID grid.412243.2, ISNI 0000 0004 1760 1136, College of Life Science, , Northeast Agricultural University, ; Harbin, China
                [7 ]GRID grid.410726.6, ISNI 0000 0004 1797 8419, University of Chinese Academy of Sciences, ; Beijing, China
                [8 ]GRID grid.452927.f, ISNI 0000 0000 9684 550X, Shanghai Key Laboratory for Assisted Reproduction and Reproductive Genetics, ; Shanghai, China
                [9 ]GRID grid.9227.e, ISNI 0000000119573309, Institute for Stem Cell and Regeneration, Chinese Academy of Sciences, ; Beijing, China
                [10 ]GRID grid.512959.3, Beijing Institute for Stem Cell and Regenerative Medicine, ; Beijing, China
                Author information
                http://orcid.org/0000-0003-2380-0011
                http://orcid.org/0000-0002-1797-7235
                http://orcid.org/0000-0001-6637-6631
                http://orcid.org/0000-0002-1758-3316
                http://orcid.org/0000-0003-2846-1813
                http://orcid.org/0000-0001-9552-6096
                http://orcid.org/0000-0002-8321-4818
                Article
                908
                10.1038/s41594-022-00908-2
                9935398
                36646905
                2e595eac-19a4-472b-a842-7a541511fe7c
                © The Author(s), under exclusive licence to Springer Nature America, Inc. 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 12 May 2022
                : 6 December 2022
                Categories
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                © The Author(s), under exclusive licence to Springer Nature America, Inc. 2023

                Molecular biology
                rna metabolism,reprogramming,rna modification
                Molecular biology
                rna metabolism, reprogramming, rna modification

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