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      Breast cancer histopathological image classification using convolutional neural networks with small SE-ResNet module

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          Abstract

          Although successful detection of malignant tumors from histopathological images largely depends on the long-term experience of radiologists, experts sometimes disagree with their decisions. Computer-aided diagnosis provides a second option for image diagnosis, which can improve the reliability of experts’ decision-making. Automatic and precision classification for breast cancer histopathological image is of great importance in clinical application for identifying malignant tumors from histopathological images. Advanced convolution neural network technology has achieved great success in natural image classification, and it has been used widely in biomedical image processing. In this paper, we design a novel convolutional neural network, which includes a convolutional layer, small SE-ResNet module, and fully connected layer. We propose a small SE-ResNet module which is an improvement on the combination of residual module and Squeeze-and-Excitation block, and achieves the similar performance with fewer parameters. In addition, we propose a new learning rate scheduler which can get excellent performance without complicatedly fine-tuning the learning rate. We use our model for the automatic classification of breast cancer histology images (BreakHis dataset) into benign and malignant and eight subtypes. The results show that our model achieves the accuracy between 98.87% and 99.34% for the binary classification and achieve the accuracy between 90.66% and 93.81% for the multi-class classification.

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          Scikit-learn: machine learning in Python

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            A Dataset for Breast Cancer Histopathological Image Classification

            Today, medical image analysis papers require solid experiments to prove the usefulness of proposed methods. However, experiments are often performed on data selected by the researchers, which may come from different institutions, scanners, and populations. Different evaluation measures may be used, making it difficult to compare the methods. In this paper, we introduce a dataset of 7909 breast cancer histopathology images acquired on 82 patients, which is now publicly available from http://web.inf.ufpr.br/vri/breast-cancer-database. The dataset includes both benign and malignant images. The task associated with this dataset is the automated classification of these images in two classes, which would be a valuable computer-aided diagnosis tool for the clinician. In order to assess the difficulty of this task, we show some preliminary results obtained with state-of-the-art image classification systems. The accuracy ranges from 80% to 85%, showing room for improvement is left. By providing this dataset and a standardized evaluation protocol to the scientific community, we hope to gather researchers in both the medical and the machine learning field to advance toward this clinical application.
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              Classification of breast cancer histology images using Convolutional Neural Networks

              Breast cancer is one of the main causes of cancer death worldwide. The diagnosis of biopsy tissue with hematoxylin and eosin stained images is non-trivial and specialists often disagree on the final diagnosis. Computer-aided Diagnosis systems contribute to reduce the cost and increase the efficiency of this process. Conventional classification approaches rely on feature extraction methods designed for a specific problem based on field-knowledge. To overcome the many difficulties of the feature-based approaches, deep learning methods are becoming important alternatives. A method for the classification of hematoxylin and eosin stained breast biopsy images using Convolutional Neural Networks (CNNs) is proposed. Images are classified in four classes, normal tissue, benign lesion, in situ carcinoma and invasive carcinoma, and in two classes, carcinoma and non-carcinoma. The architecture of the network is designed to retrieve information at different scales, including both nuclei and overall tissue organization. This design allows the extension of the proposed system to whole-slide histology images. The features extracted by the CNN are also used for training a Support Vector Machine classifier. Accuracies of 77.8% for four class and 83.3% for carcinoma/non-carcinoma are achieved. The sensitivity of our method for cancer cases is 95.6%.
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                Author and article information

                Contributors
                Role: Writing – review & editing
                Role: ConceptualizationRole: MethodologyRole: Writing – original draft
                Role: Software
                Role: Validation
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                2019
                29 March 2019
                : 14
                : 3
                : e0214587
                Affiliations
                [001] College of Computer Science and Engineering, Northwest Normal University, 730070, Lanzhou Gansu, P.R.China
                University of South Carolina, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-8664-1276
                Article
                PONE-D-18-28454
                10.1371/journal.pone.0214587
                6440620
                30925170
                2d8e7dda-9292-45ed-b84b-f57b9d33ddfa
                © 2019 Jiang et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 30 September 2018
                : 16 March 2019
                Page count
                Figures: 8, Tables: 8, Pages: 21
                Funding
                Funded by: The National Natural Science Foundation of China
                Award ID: 61163036
                Award Recipient :
                Funded by: The Science and Technology Plan Funded Natural Science Fund Project of Gansu Province (CN)
                Award ID: 1606RJZA047
                Award Recipient :
                Funded by: University Basic Research Business Expenses Special Fund Project of Gansu Province (CN)
                Award Recipient :
                Funded by: University Graduate Tutor Project of Gansu Province (CN)
                Award ID: 1201-16
                Award Recipient :
                Funded by: The Third Period of the Key Scientific Research Project of Knowledge and Innovation Engineering of the Northwest Normal University
                Award ID: nwnu-kjcxgc-03-67
                Award Recipient :
                This work was supported by National Natural Science Foundation of China (61163036), 2016 Gansu Provincial Science and Technology Plan Funded Natural Science Fund Project(1606RJZA047), 2012 Gansu Provincial University Basic Research Business Expenses Special Fund Project, Gansu Provincial University Graduate Tutor Project (1201-16), The third phase of the Northwest Normal University knowledge and innovation engineering research backbone project (nwnu-kjcxgc-03-67). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Medicine and Health Sciences
                Oncology
                Cancers and Neoplasms
                Breast Tumors
                Breast Cancer
                Computer and Information Sciences
                Neural Networks
                Biology and Life Sciences
                Neuroscience
                Neural Networks
                Medicine and Health Sciences
                Oncology
                Cancers and Neoplasms
                Breast Tumors
                Papillary Carcinomas
                Medicine and Health Sciences
                Oncology
                Cancers and Neoplasms
                Carcinomas
                Papillary Carcinomas
                Research and Analysis Methods
                Mathematical and Statistical Techniques
                Mathematical Functions
                Convolution
                Computer and Information Sciences
                Artificial Intelligence
                Machine Learning
                Support Vector Machines
                Medicine and Health Sciences
                Oncology
                Cancers and Neoplasms
                Carcinomas
                Medicine and Health Sciences
                Diagnostic Medicine
                Cancer Detection and Diagnosis
                Medicine and Health Sciences
                Oncology
                Cancer Detection and Diagnosis
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Anatomical Pathology
                Histopathology
                Custom metadata
                Our data and code are available at https://github.com/HaiCheung/BHCNet.

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                Uncategorized

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