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      Transcriptomic analysis between self- and cross-pollinated pistils of tea plants ( Camellia sinensis)

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          Abstract

          Background

          Self-incompatibility (SI) is a major barrier that obstructs the breeding process in most horticultural plants including tea plants ( Camellia sinensis). The aim of this study was to elucidate the molecular mechanism of SI in tea plants through a high throughput transcriptome analysis.

          Results

          In this study, the transcriptomes of self- and cross-pollinated pistils of two tea cultivars ‘Fudingdabai’ and ‘Yulv’ were compared to elucidate the SI mechanism of tea plants. In addition, the ion components and pollen tube growth in self- and cross-pollinated pistils were investigated. Our results revealed that both cultivars had similar pollen activities and cross-pollination could promote the pollen tube growth. In tea pistils, the highest ion content was potassium (K +), followed by calcium (Ca 2+), magnesium (Mg 2+) and phosphorus (P 5+). Ca 2+ content increased after self-pollination but decreased after cross-pollination, while K + showed reverse trend with Ca 2+. A total of 990 and 3 common differentially expressed genes (DEGs) were identified in un-pollinated vs. pollinated pistils and self- vs. cross-pollinated groups after 48 h, respectively. Function annotation indicated that three genes encoding UDP-glycosyltransferase 74B1 (UGT74B1), Mitochondrial calcium uniporter protein 2 (MCU2) and G-type lectin S-receptor-like serine/threonine-protein kinase (G-type RLK) might play important roles during SI process in tea plants.

          Conclusion

          Ca 2+ and K + are important signal for SI in tea plants, and three genes including UGT74B1, MCU2 and G-type RLK play essential roles during SI signal transduction.

          Electronic supplementary material

          The online version of this article (10.1186/s12864-018-4674-1) contains supplementary material, which is available to authorized users.

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          Most cited references27

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          Gene Ontology: tool for the unification of biology

          Genomic sequencing has made it clear that a large fraction of the genes specifying the core biological functions are shared by all eukaryotes. Knowledge of the biological role of such shared proteins in one organism can often be transferred to other organisms. The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing. To this end, three independent ontologies accessible on the World-Wide Web (http://www.geneontology.org) are being constructed: biological process, molecular function and cellular component.
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            Integrated nr database in protein annotation system and its localization

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              Identification of the pollen determinant of S-RNase-mediated self-incompatibility.

              Many flowering plants have adopted self-incompatibility mechanisms to prevent inbreeding and promote out-crosses. In the Solanaceae, Rosaceae and Scrophulariaceae, two separate genes at the highly polymorphic S-locus control self-incompatibility interactions: the S-RNase gene encodes the pistil determinant and the previously unidentified S-gene encodes the pollen determinant. S-RNases interact with pollen S-allele products to inhibit the growth of self-pollen tubes in the style. Pollen-expressed F-box genes showing allelic sequence polymorphism have recently been identified near to the S-RNase gene in members of the Rosaceae and Scrophulariaceae; but until now have not been directly shown to encode the pollen determinant. Here we report the identification and characterization of PiSLF, an S-locus F-box gene of Petunia inflata (Solanaceae). We show that transformation of S1S1, S1S2 and S2S3 plants with the S2-allele of PiSLF causes breakdown of their pollen function in self-incompatibility. This breakdown of pollen function is consistent with 'competitive interaction', in which pollen carrying two different pollen S-alleles fails to function in self-incompatibility. We conclude that PiSLF encodes the pollen self-incompatibility determinant.
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                Author and article information

                Contributors
                lxh@njau.edu.cn
                Journal
                BMC Genomics
                BMC Genomics
                BMC Genomics
                BioMed Central (London )
                1471-2164
                25 April 2018
                25 April 2018
                2018
                : 19
                : 289
                Affiliations
                [1 ]ISNI 0000 0000 9750 7019, GRID grid.27871.3b, Tea Research Institute, Nanjing Agricultural University, ; Nanjing, 210095 China
                [2 ]Tea Research Institute, Fujian Academy of Agricultural Sciences, Ningde, 355015 China
                [3 ]ISNI 0000 0004 1936 9609, GRID grid.21613.37, Department of Plant Science, , University of Manitoba, ; Winnipeg, R3T 2N2 Canada
                Article
                4674
                10.1186/s12864-018-4674-1
                5918555
                29695246
                2c3079cd-d602-4c48-9351-fb98ec738aee
                © The Author(s). 2018

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 26 July 2017
                : 13 April 2018
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100001809, National Natural Science Foundation of China;
                Award ID: 31470690
                Award ID: 31570689
                Award Recipient :
                Funded by: the China Earmarked Fund for Modern Agro-industry Technology Research System
                Award ID: CARS-19
                Award Recipient :
                Categories
                Research Article
                Custom metadata
                © The Author(s) 2018

                Genetics
                self-incompatibility,ion components,pollen tube growth,transcriptome
                Genetics
                self-incompatibility, ion components, pollen tube growth, transcriptome

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