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      Membrane Vesicles Derived From Clostridium botulinum and Related Clostridial Species Induce Innate Immune Responses via MyD88/TRIF Signaling in vitro

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          Abstract

          Clostridium botulinum produces botulinum neurotoxin complexes that cause botulism. Previous studies elucidated the molecular pathogenesis of botulinum neurotoxin complexes; however, it currently remains unclear whether other components of the bacterium affect host cells. Recent studies provided insights into the role of bacterial membrane vesicles (MVs) produced by some bacterial species in host immunity and pathology. We herein examined and compared the cellular effects of MVs isolated from four strains of C. botulinum with those of closely related Clostridium sporogenes and two strains of the symbiont Clostridium scindens. MVs derived from all strains induced inflammatory cytokine expression in intestinal epithelial and macrophage cell lines. Cytokine expression was dependent on myeloid differentiation primary response (MyD) 88 and TIR-domain-containing adapter-inducing interferon-β (TRIF), essential adaptors for toll-like receptors (TLRs), and TLR1/2/4. The inhibition of actin polymerization impeded the uptake of MVs in RAW264.7 cells, however, did not reduce the induction of cytokine expression. On the other hand, the inhibition of dynamin or phosphatidylinositol-3 kinase (PI3K) suppressed the induction of cytokine expression by MVs, suggesting the importance of these factors downstream of TLR signaling. MVs also induced expression of Reg3 family antimicrobial peptides via MyD88/TRIF signaling in primary cultured mouse small intestinal epithelial cells (IECs). The present results indicate that MVs from C. botulinum and related clostridial species induce host innate immune responses.

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          Most cited references53

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          Types and origins of bacterial membrane vesicles

          Most bacteria release membrane vesicles (MVs) that contain specific cargo molecules and have diverse functions, including the transport of virulence factors, DNA transfer, interception of bacteriophages, antibiotics and eukaryotic host defence factors, cell detoxification and bacterial communication. MVs not only are abundant in nature but also show great promise for applications in biomedicine and nanotechnology. MVs were first discovered to originate from controlled blebbing of the outer membrane of Gram-negative bacteria and are therefore often called outer-membrane vesicles (OMVs). However, recent work has shown that Gram-positive bacteria can produce MVs, that different types of MVs besides OMVs exist and that, in addition to membrane blebbing, MVs can also be formed by endolysin-triggered cell lysis. In this Review, we provide an overview of the structures and compositions of the various vesicle types and discuss novel formation routes, which may lead to distinct vesicle types that serve particular functions.
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            Precision microbiome restoration of bile acid-mediated resistance to Clostridium difficile

            The gastrointestinal tracts of mammals are colonized by hundreds of microbial species that contribute to health, including colonization resistance against intestinal pathogens 1 . Many antibiotics destroy intestinal microbial communities and increase susceptibility to intestinal pathogens 2 . Among these, Clostridium difficile, a major cause of antibiotic-induced diarrhea, greatly increases morbidity and mortality in hospitalized patients 3 . Which intestinal bacteria provide resistance to C. difficile infection and their in vivo inhibitory mechanisms remain unclear. By treating mice with different antibiotics that result in distinct microbiota changes and lead to varied susceptibility to C. difficile, we correlated loss of specific bacterial taxa with development of infection. Mathematical modeling augmented by microbiota analyses of hospitalized patients identified resistance-associated bacteria common to mice and humans. Using these platforms, we determined that Clostridium scindens, a bile acid 7-dehydroxylating intestinal bacterium, is associated with resistance to C. difficile infection and, upon administration, enhances resistance to infection in a secondary bile acid-dependent fashion. Using a workflow involving mouse models, clinical studies, metagenomic analyses and mathematical modeling, we identified a probiotic candidate that corrects a clinically relevant microbiome deficiency. These findings have implications for rational design of targeted antimicrobials as well as microbiome-based diagnostics and therapeutics for individuals at risk for C. difficile infection.
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              In vitro expansion and genetic modification of gastrointestinal stem cells in spheroid culture.

              It is useful to be able to grow enriched populations of stem cells in vitro. Growth of stem cells as tissue spheroids is a key methodology permitting sustainable culture of adult epithelial cells. Gastrointestinal stem cells can be propagated by using conditioned medium from a supportive cell line (L-WRN). This protocol describes how to prepare conditioned medium and how to culture stem cell-enriched epithelial spheroids from the mouse gastrointestine. These spheroids are also amenable to genetic modification with recombinant lentiviruses. This system enables many types of cell biological assays that have been performed with immortalized cell lines to be applied to spheroids. Isolation of epithelial cell units from mice takes up to 2 h, and stem cell-enriched gastrointestinal spheroids are obtained within 3 d. Genetically modified spheroids with lentiviruses can be obtained in 2 weeks.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                03 February 2022
                2022
                : 13
                : 720308
                Affiliations
                [1] 1Department of Bacteriology, Graduate School of Medical Sciences, Kanazawa University , Kanazawa, Japan
                [2] 2Faculty of Life and Environmental Sciences, University of Tsukuba , Ibaraki, Japan
                [3] 3Department of Functional Anatomy, Graduate School of Medical Sciences, Kanazawa University , Kanazawa, Japan
                [4] 4Department of Forensic Medicine and Pathology, Graduate School of Medical Sciences , Kanazawa, Japan
                [5] 5Microbiology Research Center for Sustainability, University of Tsukuba , Ibaraki, Japan
                [6] 6Transborder Medical Research Center, Faculty of Medicine, University of Tsukuba , Ibaraki, Japan
                Author notes

                Edited by: Gee W. Lau, University of Illinois at Urbana-Champaign, United States

                Reviewed by: Geetha Parthasarathy, Tulane University, United States; Qing Deng, Purdue University, United States

                *Correspondence: Yukako Fujinaga, yukafuji@ 123456med.kanazawa-u.ac.jp

                This article was submitted to Microbial Immunology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2022.720308
                8851338
                2b34de15-8fe3-4f50-b992-f0a6d65b129c
                Copyright © 2022 Kobayashi, Abe, Akagi, Kitamura, Shiraishi, Yamaguchi, Yutani, Amatsu, Matsumura, Nomura, Ozaki, Obana and Fujinaga.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 07 June 2021
                : 10 January 2022
                Page count
                Figures: 7, Tables: 0, Equations: 0, References: 53, Pages: 15, Words: 8072
                Funding
                Funded by: Japan Society for the Promotion of Science , doi 10.13039/501100001691;
                Award ID: 20K17462
                Award ID: 18H02654
                Funded by: AMED , doi 10.13039/100009619;
                Award ID: 20wm0325025h0001
                Funded by: Ohyama Health Foundation
                Funded by: Takeda Science Foundation , doi 10.13039/100007449;
                Funded by: Yakult Foundation
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                clostridium botulinum,clostridium sporogenes,clostridium scindens,membrane vesicles,innate immunity,toll-like receptors,myd88,trif

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