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      Robustness of magnetic resonance imaging and positron emission tomography radiomic features in prostate cancer: Impact on recurrence prediction after radiation therapy

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          Highlights

          • Segmentation variability impacts the robustness of Magnetic Resonance Imaging (MRI) and Positron Emission Tomography (PET) radiomic features.

          • Only a small number (19%) of radiomic features were classified as robust.

          • Grey-level texture features are more robust than first-order or shape features.

          • Prostate-Specific Membrane Antigen (PSMA)-PET has more radiomic features with ‘excellent’ robustness than T2 or Apparent Diffusion Coefficient (ADC) MRI.

          • A random forest model using manual prostate segmentation-based radiomic features best predicted biochemical recurrence (BCR).

          Abstract

          Background and purpose

          Radiomic features from MRI and PET are an emerging tool with potential to improve prostate cancer outcomes. However, feature robustness due to image segmentation variations is currently unknown. Therefore, this study aimed to evaluate the robustness of radiomic features with segmentation variations and their impact on predicting biochemical recurrence (BCR).

          Materials and methods

          Multi-scanner, pre-radiation therapy imaging from 142 patients with localised prostate cancer was used. Imaging included T2-weighted (T2), apparent diffusion coefficient (ADC) MRI, and prostate-specific membrane antigen (PSMA)-PET. The prostate gland and intraprostatic tumours were manually and automatically segmented, and differences were quantified using Dice Coefficient (DC). Radiomic features including shape, first-order, and texture features were extracted for each segmentation from original and filtered images. Intraclass Correlation Coefficient (ICC) and Mean Absolute Percentage Difference (MAPD) were used to assess feature robustness. Random forest (RF) models were developed for each segmentation using robust features to predict BCR.

          Results

          Prostate gland segmentations were more consistent (mean DC = 0.78) than tumour segmentations (mean DC = 0.46). 112 (3.6 %) radiomic features demonstrated ‘excellent’ robustness (ICC > 0.9 and MAPD < 1 %), and 480 features (15.4 %) demonstrated ‘good’ robustness (ICC > 0.75 and MAPD < 5 %). PET imaging provided more features with excellent robustness than T2 and ADC. RF models showed strong predictive power for BCR with a mean area under the receiver-operator-characteristics curve (AUC) of 0.89 (range 0.85–0.93).

          Conclusion

          When using radiomic features for predictive modelling, segmentation variability should be considered. To develop BCR predictive models, radiomic features from the entire prostate gland are preferable over tumour segmentation-based features.

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          Most cited references37

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          A Guideline of Selecting and Reporting Intraclass Correlation Coefficients for Reliability Research.

          Intraclass correlation coefficient (ICC) is a widely used reliability index in test-retest, intrarater, and interrater reliability analyses. This article introduces the basic concept of ICC in the content of reliability analysis.
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            SMOTE: Synthetic Minority Over-sampling Technique

            An approach to the construction of classifiers from imbalanced datasets is described. A dataset is imbalanced if the classification categories are not approximately equally represented. Often real-world data sets are predominately composed of ``normal'' examples with only a small percentage of ``abnormal'' or ``interesting'' examples. It is also the case that the cost of misclassifying an abnormal (interesting) example as a normal example is often much higher than the cost of the reverse error. Under-sampling of the majority (normal) class has been proposed as a good means of increasing the sensitivity of a classifier to the minority class. This paper shows that a combination of our method of over-sampling the minority (abnormal) class and under-sampling the majority (normal) class can achieve better classifier performance (in ROC space) than only under-sampling the majority class. This paper also shows that a combination of our method of over-sampling the minority class and under-sampling the majority class can achieve better classifier performance (in ROC space) than varying the loss ratios in Ripper or class priors in Naive Bayes. Our method of over-sampling the minority class involves creating synthetic minority class examples. Experiments are performed using C4.5, Ripper and a Naive Bayes classifier. The method is evaluated using the area under the Receiver Operating Characteristic curve (AUC) and the ROC convex hull strategy.
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              Computational Radiomics System to Decode the Radiographic Phenotype

              Radiomics aims to quantify phenotypic characteristics on medical imaging through the use of automated algorithms. Radiomic artificial intelligence (AI) technology, either based on engineered hard-coded algorithms or deep learning methods, can be used to develop non-invasive imaging-based biomarkers. However, lack of standardized algorithm definitions and image processing severely hampers reproducibility and comparability of results. To address this issue, we developed PyRadiomics , a flexible open-source platform capable of extracting a large panel of engineered features from medical images. PyRadiomics is implemented in Python and can be used standalone or using 3D-Slicer. Here, we discuss the workflow and architecture of PyRadiomics and demonstrate its application in characterizing lung-lesions. Source code, documentation, and examples are publicly available at www.radiomics.io . With this platform, we aim to establish a reference standard for radiomic analyses, provide a tested and maintained resource, and to grow the community of radiomic developers addressing critical needs in cancer research.
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                Author and article information

                Contributors
                Journal
                Phys Imaging Radiat Oncol
                Phys Imaging Radiat Oncol
                Physics and Imaging in Radiation Oncology
                Elsevier
                2405-6316
                31 December 2023
                January 2024
                31 December 2023
                : 29
                : 100530
                Affiliations
                [a ]Auckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand
                [b ]Department of Radiation Oncology, Royal North Shore Hospital, Sydney, New South Wales, Australia
                [c ]Institute of Medical Physics, School of Physics, University of Sydney, Sydney, New South Wales, Australia
                [d ]Department of Anatomy and Medical Imaging, Faculty of Medical and Health Sciences, The University of Auckland, Auckland, New Zealand
                [e ]Centre for Advanced MRI, The University of Auckland, Auckland, New Zealand
                Author notes
                [* ]Corresponding author at: School of Physics (A28), Physics Road, Camperdown 2006, Australia. annette.haworth@ 123456sydney.edu.au
                Article
                S2405-6316(23)00121-5 100530
                10.1016/j.phro.2023.100530
                10809082
                38275002
                2ada2854-af9e-4242-b260-03ee60a472ae
                © 2024 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 28 August 2023
                : 21 December 2023
                : 29 December 2023
                Categories
                Original Research Article

                prostate cancer,pet,mri,robustness,radiomics,recurrence prediction

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